Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 5.5e-295 1016.9 526 100.0
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 6.8e-237 823.9 451 94.2
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 5.0e-203 711.4 468 78.6
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 1.1e-149 534.3 463 62.2
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 2.4e-149 533.1 463 62.4
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.1e-149 532.3 463 62.0
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 7.0e-149 531.6 463 61.8
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 3.6e-145 519.2 470 60.2
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 3.5e-140 502.7 460 60.2
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 2.5e-138 496.5 439 61.5
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 5.6e-138 495.4 439 61.3
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 8.1e-137 491.5 462 58.9
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.7e-134 483.8 468 54.7
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.2e-134 483.4 464 56.5
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 4.6e-132 475.7 468 54.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.5e-130 469.9 480 54.8
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 8.1e-129 464.9 455 55.4
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.4e-128 464.2 464 53.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 6.8e-128 461.8 461 53.4
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 8.9e-128 461.5 451 55.4
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 1.7e-126 457.2 464 53.4
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.4e-125 454.1 470 52.8
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 4.1e-125 452.6 456 54.6
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 7.1e-125 451.8 467 51.0
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 9.2e-125 451.4 457 54.5
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 2.7e-124 449.9 465 53.5
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 6.0e-124 448.7 456 53.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 7.8e-124 448.4 442 55.2
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 3.0e-123 446.4 452 54.4
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 3.9e-123 446.0 454 52.2
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 6.6e-123 445.3 454 52.0
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 8.6e-123 444.9 464 51.5
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-122 443.0 453 53.4
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 3.3e-122 443.0 453 53.4
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 5.6e-122 442.2 457 52.5
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.6e-121 440.7 454 52.0
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.1e-121 440.3 453 52.8
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 2.1e-121 440.3 446 53.1
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 1.4e-120 437.6 461 53.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 7.6e-119 431.8 454 53.7
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 7.6e-119 431.8 451 55.0
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 9.9e-119 431.4 509 49.1
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 4.9e-118 429.1 453 51.9
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.7e-116 423.3 445 52.4
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 4.6e-116 422.5 451 54.1
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 6.6e-115 418.7 424 52.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 6.6e-115 418.7 454 49.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 6.6e-115 418.7 478 50.4
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 1.1e-114 417.9 462 52.6
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 1.1e-114 417.9 411 54.0
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 1.5e-114 417.5 468 49.4
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 4.3e-114 416.0 473 50.5
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 4.8e-113 412.5 458 49.6
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 2.4e-112 410.2 460 50.4
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 5.3e-112 409.1 456 49.6
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 3.4e-111 406.4 464 49.1
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 5.8e-111 405.6 470 48.3
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.7e-110 404.1 470 48.9
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 3.8e-110 402.9 470 49.1
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.1e-109 401.4 454 48.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.1e-109 401.4 454 48.9
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.4e-109 401.0 475 48.4
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 1.4e-109 401.0 434 51.8
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 3.2e-109 399.8 470 48.3
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 1.0e-107 394.8 423 51.1
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 1.3e-107 394.4 455 49.7
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.3e-107 394.4 452 50.7
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.0e-107 393.3 451 48.6
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.9e-107 392.9 473 48.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.9e-107 392.9 466 50.4
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 6.6e-107 392.1 459 47.3
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 1.4e-104 384.4 434 49.1
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 4.0e-104 382.9 443 48.8
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 1.5e-103 380.9 457 48.8
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.8e-102 376.3 460 48.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 4.9e-102 375.9 481 45.3
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 1.4e-101 374.4 471 46.9
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.9e-101 374.0 436 49.1
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 3.2e-101 373.2 460 45.4
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 7.1e-101 372.1 432 48.1
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.7e-100 370.2 452 47.3
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.0e-99 368.2 448 48.2
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.8e-99 367.5 436 47.7
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 2.3e-99 367.1 447 46.5
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 3.9e-99 366.3 425 47.1
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 5.1e-99 365.9 464 44.8
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.1e-98 364.8 430 46.0
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 1.5e-98 364.4 463 44.5
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 9.6e-98 361.7 430 45.6
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 9.6e-98 361.7 464 47.6
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.6e-97 360.9 465 45.2
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 2.1e-97 360.5 462 43.3
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 3.7e-97 359.8 462 43.5
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 4.8e-97 359.4 462 43.1
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 6.2e-97 359.0 462 43.5
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 6.2e-97 359.0 425 45.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 1.1e-96 358.2 462 43.5
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 1.8e-96 357.5 466 45.5
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 3.1e-96 356.7 465 44.1
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 2.9e-94 350.1 373 52.8
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 4.2e-93 346.3 453 46.8
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 5.5e-93 345.9 471 45.0
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 9.3e-93 345.1 460 42.4
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 2.7e-92 343.6 454 44.7
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.0e-91 340.1 475 44.6
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 6.7e-91 339.0 425 46.1
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 9.6e-90 335.1 470 43.8
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 2.8e-89 333.6 441 40.8
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 4.1e-88 329.7 473 42.5
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 4.1e-88 329.7 460 43.0
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 2.0e-87 327.4 460 42.8
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 2.5e-85 320.5 460 42.0
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 7.2e-85 318.9 430 42.1
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 9.3e-85 318.5 458 41.3
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.0e-83 315.1 464 40.9
Gohir.D01G167300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 1.3e-83 314.7 277 57.0
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.7e-83 312.0 485 42.1
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.5e-82 311.2 473 41.2
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 1.9e-82 310.8 441 40.6
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 7.4e-82 308.9 386 45.6
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 3.8e-78 296.6 465 41.5
C06p22270 Brassica napus HOM05D003578 ORTHO05D004021 1.3e-73 281.6 458 38.2
Nn1g08571 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.5e-66 258.1 246 54.9
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.0e-66 257.7 391 37.6
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 3.7e-65 253.4 437 36.6
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.1e-56 223.8 467 34.7
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.6e-55 221.5 244 53.7
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 2.3e-51 207.6 425 32.7
TAR374G1024 Trochodendron aralioides HOM05D003578 ORTHO05D004021 5.2e-51 206.5 148 68.9
CiPaw.05G040700 Carya illinoinensis HOM05D003578 ORTHO05D004021 9.8e-50 202.2 143 69.2
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 9.1e-48 195.7 365 36.2
Aqoxy2G02351 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 8.5e-46 189.1 188 53.7
CsaV3_3G021940 Cucumis sativus L. HOM05D003578 ORTHO05D004021 8.0e-44 182.6 144 63.9
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 4.0e-43 180.3 249 41.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.8e-41 174.1 318 35.2
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 9.2e-40 169.1 474 29.7
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 1.4e-35 155.2 453 27.6
A07p22210 Brassica napus HOM05D003578 ORTHO05D004021 3.0e-30 137.5 136 46.3
ATR0686G046 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.6e-28 131.7 146 45.9
Nn7g38101 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.4e-27 128.6 164 42.7
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 1.4e-27 128.6 407 27.3
HPP92_025538 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.7e-25 120.6 147 44.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 8.3e-25 119.4 445 26.3
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.2e-24 115.9 146 43.2
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 9.2e-24 115.9 154 39.0
CsaV3_6G032180 Cucumis sativus L. HOM05D003578 ORTHO05D004021 2.0e-23 114.8 104 57.7
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-22 110.9 196 34.7
COL.COLO4_34280 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.9e-21 108.2 85 61.2
HPP92_026283 Vanilla planifolia HOM05D003578 ORTHO05D004021 5.6e-21 106.7 123 46.3
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 9.5e-21 105.9 200 36.0
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.2e-20 105.5 115 47.0
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 1.6e-20 105.1 92 54.3
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 3.6e-20 104.0 145 44.1
PGSC0003DMG400023774 Solanum tuberosum HOM05D003578 ORTHO05D004021 8.9e-19 99.4 123 46.3
Zm00001eb226250 Zea mays HOM05D003578 ORTHO05D004021 8.9e-19 99.4 111 45.9
Zm00001eb317570 Zea mays HOM05D003578 ORTHO05D004021 1.5e-18 98.6 131 42.7
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 3.2e-16 90.9 73 61.6
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 2.7e-15 87.8 473 23.0
Solyc01g104520.3 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.3e-14 84.7 114 46.5
Zm00001eb322170 Zea mays HOM05D003578 ORTHO05D004021 4.4e-10 70.5 84 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1577 Anthoceros agrestis HOM05D003578 ORTHO05D004021 7.6e-10 69.7 244 24.2
Nn7g38100 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.3e-09 68.9 102 41.2
Aqoxy2G04053 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.7e-09 68.6 65 52.3
Aqoxy7G03366 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.7e-09 68.6 65 52.3
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 1.7e-09 68.6 72 50.0


User provided reference genes

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