Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 2.1e-79 298.9 141 100.0
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 2.6e-34 149.1 70 91.4
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 5.9e-34 147.9 70 91.4
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 2.9e-33 145.6 99 70.7
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 2.9e-33 145.6 70 90.0
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 2.9e-33 145.6 70 90.0
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 5.0e-33 144.8 69 88.4
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 5.0e-33 144.8 69 88.4
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 5.0e-33 144.8 69 88.4
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.0e-33 144.8 69 89.9
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 6.5e-33 144.4 69 88.4
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 1.1e-32 143.7 71 88.7
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 1.4e-32 143.3 70 88.6
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.4e-32 143.3 70 88.6
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-32 143.3 71 85.9
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.4e-32 143.3 79 79.7
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.4e-32 143.3 76 80.3
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.9e-32 142.9 70 87.1
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-32 142.9 70 87.1
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.9e-32 142.9 69 88.4
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.9e-32 142.9 70 88.6
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 2.5e-32 142.5 70 85.7
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.5e-32 142.5 73 86.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 3.2e-32 142.1 70 87.1
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 3.2e-32 142.1 68 86.8
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 4.2e-32 141.7 83 80.7
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 4.2e-32 141.7 69 89.9
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 5.5e-32 141.4 71 84.5
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 5.5e-32 141.4 70 87.1
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 5.5e-32 141.4 69 87.0
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.2e-32 141.0 70 88.6
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.2e-32 141.0 70 88.6
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 9.3e-32 140.6 69 88.4
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.6e-31 139.8 69 89.9
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.6e-31 139.8 70 85.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.6e-31 139.8 70 87.1
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.1e-31 139.4 70 87.1
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 2.1e-31 139.4 70 85.7
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.7e-31 139.0 70 87.1
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 3.6e-31 138.7 69 88.4
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 3.6e-31 138.7 72 84.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 3.6e-31 138.7 70 87.1
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 4.6e-31 138.3 70 82.9
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 4.6e-31 138.3 69 85.5
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 6.1e-31 137.9 73 82.2
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 6.1e-31 137.9 69 85.5
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 6.1e-31 137.9 70 82.9
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 7.9e-31 137.5 70 85.7
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.9e-31 137.5 70 84.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.0e-30 137.1 69 87.0
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-30 137.1 69 87.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.0e-30 137.1 69 87.0
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.0e-30 137.1 69 87.0
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 1.0e-30 137.1 68 83.8
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-30 136.7 73 82.2
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.3e-30 136.7 70 82.9
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 1.8e-30 136.3 69 85.5
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.8e-30 136.3 70 84.3
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.8e-30 136.3 73 79.5
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.3e-30 136.0 70 81.4
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 3.0e-30 135.6 73 74.0
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 3.0e-30 135.6 71 83.1
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.0e-30 135.6 70 81.4
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 5.1e-30 134.8 69 84.1
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 5.1e-30 134.8 70 81.4
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 6.7e-30 134.4 70 84.3
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 6.7e-30 134.4 109 62.4
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 8.7e-30 134.0 70 81.4
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.7e-30 134.0 70 81.4
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 1.1e-29 133.7 69 84.1
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 1.1e-29 133.7 70 81.4
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 1.1e-29 133.7 69 81.2
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-29 133.3 70 82.9
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 1.9e-29 132.9 71 78.9
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.9e-29 132.9 71 81.7
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.9e-29 132.9 70 80.0
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.9e-29 132.9 70 77.1
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.9e-29 132.9 68 79.4
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 2.5e-29 132.5 70 80.0
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 3.3e-29 132.1 70 81.4
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.3e-29 132.1 70 82.9
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 3.3e-29 132.1 70 78.6
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 4.3e-29 131.7 71 80.3
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 4.3e-29 131.7 93 67.7
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 4.3e-29 131.7 70 82.9
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 5.7e-29 131.3 70 81.4
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.3e-28 130.2 70 80.0
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.6e-28 129.8 90 67.8
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 1.6e-28 129.8 70 80.0
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 2.2e-28 129.4 71 77.5
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 2.2e-28 129.4 69 73.9
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 2.8e-28 129.0 69 81.2
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 2.8e-28 129.0 69 79.7
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.8e-28 129.0 70 78.6
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 3.7e-28 128.6 69 79.7
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 3.7e-28 128.6 70 80.0
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.8e-28 128.3 68 82.4
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 4.8e-28 128.3 68 79.4
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.8e-28 128.3 70 78.6
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.8e-28 128.3 70 78.6
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.8e-28 128.3 70 78.6
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.8e-28 128.3 70 80.0
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 6.3e-28 127.9 70 77.1
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 6.3e-28 127.9 60 86.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.2e-28 127.5 70 75.7
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 8.2e-28 127.5 70 77.1
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 8.2e-28 127.5 60 88.3
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.1e-27 127.1 64 81.2
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-27 126.7 70 80.0
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.8e-27 126.3 68 72.1
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 1.8e-27 126.3 67 80.6
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 3.1e-27 125.6 95 58.9
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 5.3e-27 124.8 59 86.4
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 9.1e-27 124.0 60 88.3
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-26 123.6 70 75.7
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.2e-26 123.6 70 75.7
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-26 123.2 70 72.9
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.5e-26 123.2 69 76.8
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.5e-26 123.2 67 79.1
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 2.0e-26 122.9 70 75.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.6e-26 122.5 60 86.7
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 2.6e-26 122.5 96 62.5
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 2.6e-26 122.5 96 62.5
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.6e-26 122.5 70 77.1
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.6e-26 122.5 59 84.7
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 4.5e-26 121.7 60 85.0
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 4.5e-26 121.7 72 73.6
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 5.9e-26 121.3 68 75.0
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 5.9e-26 121.3 68 76.5
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.9e-26 121.3 70 74.3
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-25 120.6 61 82.0
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.3e-25 120.2 59 81.4
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 1.3e-25 120.2 70 74.3
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.7e-25 119.8 64 79.7
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.7e-25 119.8 68 75.0
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.9e-25 119.0 61 78.7
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 2.9e-25 119.0 70 72.9
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 2.9e-25 119.0 70 72.9
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 3.8e-25 118.6 70 74.3
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 6.5e-25 117.9 70 68.6
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 1.4e-24 116.7 67 71.6
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 1.4e-24 116.7 67 71.6
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.9e-24 116.3 69 69.6
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.2e-24 115.5 59 79.7
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 3.2e-24 115.5 70 68.6
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 7.2e-24 114.4 70 71.4
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 7.2e-24 114.4 70 71.4
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 7.2e-24 114.4 70 68.6
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 1.2e-23 113.6 67 68.7
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.6e-23 113.2 75 64.0
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.6e-23 113.2 69 69.6
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.6e-23 113.2 70 68.6
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 3.6e-23 112.1 69 68.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 3.6e-23 112.1 70 68.6
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.4e-22 110.2 57 77.2
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 3.9e-22 108.6 99 53.5
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 5.1e-22 108.2 67 71.6
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 5.1e-22 108.2 62 69.4
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.7e-22 107.8 64 70.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.7e-22 107.8 64 70.3
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-21 107.1 70 68.6
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.5e-21 106.7 70 67.1
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.4e-21 105.1 70 65.7
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.7e-20 103.2 78 55.1
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 3.7e-20 102.1 58 69.0
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 4.8e-20 101.7 60 70.0
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 4.8e-20 101.7 66 63.6
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.1e-19 99.0 68 60.3
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 6.9e-19 97.8 58 70.7
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 9.1e-19 97.4 78 56.4
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 5.9e-18 94.7 57 61.4
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 6.5e-17 91.3 49 67.3
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.1e-16 90.5 41 92.7
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 1.9e-16 89.7 67 65.7
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 7.9e-15 84.3 67 61.2
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 7.9e-15 84.3 67 61.2
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.4e-13 78.6 43 79.1
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.4e-11 72.8 51 58.8
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 2.4e-11 72.8 70 51.4
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 9.1e-11 70.9 70 50.0
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 4.5e-10 68.6 35 82.9
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 7.7e-10 67.8 37 64.9
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.7e-09 66.6 70 48.6
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.2e-08 62.4 50 54.0
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 1.4e-06 57.0 29 89.7


User provided reference genes

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