Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.5e-47 192.6 105 100.0
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 2.0e-42 175.6 105 83.8
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 1.1e-40 169.9 105 80.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 2.9e-38 161.8 105 78.1
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.9e-37 159.1 107 76.6
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.2e-36 156.4 107 74.8
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.6e-36 154.8 89 79.8
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 4.7e-36 154.5 87 81.6
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 6.1e-36 154.1 107 73.8
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 1.4e-35 152.9 88 87.5
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.8e-35 152.5 85 80.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 3.0e-35 151.8 107 72.9
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 3.9e-35 151.4 89 77.5
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.9e-35 151.4 107 72.0
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.6e-34 148.7 87 78.2
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.3e-34 148.3 89 77.5
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 3.3e-34 148.3 89 78.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 5.7e-34 147.5 87 74.7
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 7.4e-34 147.1 89 77.5
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 9.7e-34 146.7 87 74.7
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 9.7e-34 146.7 105 66.7
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.7e-33 146.0 83 78.3
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.8e-33 145.2 89 76.4
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.8e-33 145.2 89 73.0
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 2.8e-33 145.2 86 75.6
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 3.7e-33 144.8 91 74.7
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 8.2e-33 143.7 105 69.5
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.1e-32 143.3 86 79.1
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.1e-32 141.7 90 75.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 5.3e-32 141.0 90 76.7
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 5.3e-32 141.0 93 74.2
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.0e-32 140.6 89 73.0
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 9.1e-32 140.2 87 75.9
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 1.2e-31 139.8 89 74.2
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.6e-31 139.4 89 71.9
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 2.0e-31 139.0 88 73.9
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.0e-31 139.0 89 71.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.6e-31 138.7 89 71.9
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 4.5e-31 137.9 105 67.6
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.5e-31 137.9 87 71.3
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.9e-31 137.5 89 71.9
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.9e-31 137.5 86 74.4
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 5.9e-31 137.5 86 74.4
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.9e-31 137.5 85 77.6
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 7.7e-31 137.1 82 76.8
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-30 136.7 77 77.9
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.0e-30 136.7 87 70.1
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.3e-30 136.3 98 71.4
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.3e-30 136.3 81 76.5
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.3e-30 136.3 87 74.7
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 1.3e-30 136.3 89 73.0
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 2.2e-30 135.6 78 76.9
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 2.2e-30 135.6 78 76.9
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 3.8e-30 134.8 87 73.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 3.8e-30 134.8 87 73.6
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 5.0e-30 134.4 90 70.0
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 5.0e-30 134.4 79 77.2
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 5.0e-30 134.4 91 71.4
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 5.0e-30 134.4 85 72.9
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 1.1e-29 133.3 87 72.4
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.5e-29 132.1 87 73.6
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 5.5e-29 131.0 72 84.7
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 7.2e-29 130.6 78 74.4
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 7.2e-29 130.6 78 74.4
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 7.2e-29 130.6 89 70.8
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 9.4e-29 130.2 102 63.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 9.4e-29 130.2 78 75.6
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-28 129.8 91 69.2
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.2e-28 129.8 77 79.2
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.2e-28 129.8 90 72.2
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 2.1e-28 129.0 91 68.1
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 2.1e-28 129.0 100 66.0
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.7e-28 128.6 81 75.3
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.7e-28 128.6 79 77.2
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.7e-28 128.6 87 73.6
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 3.6e-28 128.3 77 77.9
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 4.7e-28 127.9 77 79.2
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 1.4e-27 126.3 76 77.6
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.8e-27 125.9 80 75.0
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.0e-27 124.8 81 72.8
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 4.0e-27 124.8 79 75.9
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.7e-27 124.0 90 67.8
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 6.7e-27 124.0 92 64.1
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 8.8e-27 123.6 75 78.7
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.5e-26 122.9 69 81.2
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-26 122.1 74 75.7
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-26 122.1 74 75.7
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.3e-26 121.7 82 70.7
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 4.4e-26 121.3 81 70.4
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 5.7e-26 120.9 79 68.4
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 5.7e-26 120.9 86 68.6
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 7.5e-26 120.6 89 66.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 9.7e-26 120.2 105 61.0
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.3e-25 119.8 74 74.3
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-25 119.8 74 74.3
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.3e-25 119.8 72 77.8
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.7e-25 119.4 79 72.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.2e-25 119.0 74 74.3
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.2e-25 119.0 89 61.8
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 2.2e-25 119.0 89 61.8
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 2.2e-25 119.0 75 70.7
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 3.7e-25 118.2 78 73.1
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.8e-25 117.9 87 69.0
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 6.3e-25 117.5 77 70.1
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 6.3e-25 117.5 77 70.1
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 6.3e-25 117.5 70 74.3
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.3e-25 117.5 78 73.1
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.4e-24 116.3 89 61.8
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 2.4e-24 115.5 64 81.2
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-24 115.5 87 66.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 2.4e-24 115.5 87 66.7
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.4e-24 115.5 89 60.7
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 3.1e-24 115.2 71 73.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 4.1e-24 114.8 83 62.7
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 4.1e-24 114.8 78 67.9
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 4.1e-24 114.8 78 67.9
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 7.0e-24 114.0 78 66.7
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 7.0e-24 114.0 80 68.8
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 7.0e-24 114.0 81 67.9
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 2.0e-23 112.5 73 69.9
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 2.7e-23 112.1 82 68.3
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 3.5e-23 111.7 79 68.4
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 3.5e-23 111.7 89 59.6
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 5.9e-23 110.9 75 72.0
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 7.7e-23 110.5 83 60.2
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 3.8e-22 108.2 79 65.8
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 3.8e-22 108.2 67 74.6
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 6.5e-22 107.5 74 71.6
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 8.5e-22 107.1 66 75.8
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 2.5e-21 105.5 66 74.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 1.2e-20 103.2 82 58.5
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 3.6e-20 101.7 86 58.1
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-19 100.1 65 70.8
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 4.0e-19 98.2 69 63.8
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 4.0e-19 98.2 69 63.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.0e-18 95.9 83 57.8
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 7.5e-18 94.0 62 66.1
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 9.8e-18 93.6 60 68.3
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.3e-17 93.2 82 53.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.7e-17 92.8 65 69.2
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 1.4e-16 89.7 75 57.3
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.4e-16 89.0 65 64.6
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.4e-16 87.8 61 65.6
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 5.4e-16 87.8 63 60.3
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.6e-15 86.3 60 63.3
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.0e-15 85.9 56 67.9
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 3.5e-15 85.1 113 42.5
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.5e-15 84.7 56 66.1
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.7e-14 82.8 56 64.3
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.9e-14 82.0 64 57.8
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 9.5e-13 77.0 44 75.0
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.1e-12 75.9 56 60.7
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.6e-12 75.1 63 50.8
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 8.0e-12 73.9 40 82.5
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 8.3e-09 63.9 57 49.1
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 1.7e-06 56.2 42 61.9
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 5.0e-06 54.7 44 56.8


User provided reference genes

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