Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-194 682.9 345 100.0
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.2e-189 666.4 345 98.0
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 3.7e-183 644.8 344 94.5
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 1.8e-169 599.4 345 89.3
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 2.4e-166 589.0 344 87.5
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 6.8e-161 570.9 342 86.0
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 1.5e-152 543.1 358 78.8
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 2.9e-151 538.9 336 79.8
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 1.1e-150 537.0 345 79.1
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 5.4e-150 534.6 338 80.5
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 3.0e-148 528.9 339 78.2
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.9e-148 528.5 357 77.6
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 5.1e-148 528.1 340 77.6
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 1.9e-147 526.2 314 81.2
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 4.3e-147 525.0 315 80.3
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 7.4e-147 524.2 345 76.8
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 7.4e-147 524.2 314 81.2
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 9.6e-147 523.9 315 80.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 1.3e-146 523.5 345 77.4
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.6e-146 523.1 341 78.3
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 2.1e-146 522.7 315 80.3
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 2.8e-146 522.3 336 78.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 4.8e-146 521.5 315 79.7
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 2.4e-145 519.2 352 75.6
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 4.0e-145 518.5 340 77.9
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 2.0e-144 516.2 335 76.7
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 3.4e-144 515.4 334 77.8
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 1.3e-143 513.5 344 76.5
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 6.4e-143 511.1 315 79.0
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 6.4e-143 511.1 317 77.9
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 4.2e-142 508.4 346 73.7
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 5.5e-142 508.1 311 81.7
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 1.2e-141 506.9 333 75.4
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.2e-141 506.9 340 74.7
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 3.5e-141 505.4 319 77.4
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 1.0e-140 503.8 367 70.8
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 1.8e-140 503.1 313 79.6
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 5.1e-140 501.5 362 71.0
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.5e-139 500.0 340 75.9
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 2.5e-139 499.2 313 77.0
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 3.3e-139 498.8 319 74.6
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 3.3e-139 498.8 314 78.0
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 7.4e-139 497.7 305 79.3
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.8e-138 495.7 334 74.9
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 2.8e-138 495.7 295 83.7
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 3.7e-138 495.4 341 73.6
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 6.2e-138 494.6 319 77.7
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 8.1e-138 494.2 305 80.7
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 1.1e-137 493.8 305 79.3
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.8e-137 493.0 344 72.4
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 2.4e-137 492.7 343 74.3
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 4.0e-137 491.9 351 72.6
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 2.6e-136 489.2 288 83.3
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.7e-135 486.5 349 72.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.9e-135 485.7 367 69.2
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 3.8e-135 485.3 329 74.8
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 3.8e-135 485.3 306 79.1
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 3.8e-135 485.3 313 75.7
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 1.1e-134 483.8 303 77.9
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 2.5e-134 482.6 304 79.9
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 4.2e-134 481.9 341 71.8
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 7.1e-134 481.1 308 77.9
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 9.3e-134 480.7 314 75.2
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 2.1e-133 479.6 354 70.3
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.5e-133 478.8 309 77.3
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 7.9e-133 477.6 327 74.9
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 1.3e-132 476.9 349 70.5
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.8e-132 476.5 367 66.5
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.8e-132 476.5 367 66.5
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 2.3e-132 476.1 308 76.9
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 5.1e-132 474.9 321 74.1
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 1.3e-130 470.3 344 71.2
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 1.6e-130 469.9 320 75.6
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 8.2e-130 467.6 343 70.6
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 3.1e-129 465.7 343 70.0
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 2.6e-128 462.6 308 75.6
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 1.3e-127 460.3 343 68.8
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.7e-127 459.9 354 68.1
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 7.2e-126 454.5 375 65.3
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.2e-125 453.8 300 76.0
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 2.1e-125 453.0 330 72.4
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 1.9e-123 446.4 356 66.3
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 1.5e-120 436.8 287 76.3
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 4.5e-120 435.3 354 66.1
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.5e-118 429.5 272 78.7
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 3.9e-116 422.2 275 76.4
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 1.4e-113 413.7 309 69.6
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.1e-110 404.1 281 70.1
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 3.6e-109 399.1 335 61.2
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 2.0e-107 393.3 285 72.3
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 7.4e-107 391.3 324 61.1
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.3e-106 390.6 345 65.5
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.2e-101 374.0 269 72.5
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 1.6e-101 373.6 285 68.4
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.0e-100 370.9 238 76.1
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.7e-98 363.6 302 59.9
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 8.2e-98 361.3 299 65.9
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.7e-96 356.3 242 73.1
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 2.5e-94 349.7 308 56.8
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 8.8e-92 341.3 206 83.0
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.2e-91 340.9 254 67.7
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 5.7e-91 338.6 348 57.2
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.7e-90 337.0 201 82.6
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 4.1e-89 332.4 272 65.1
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 1.8e-84 317.0 308 57.5
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 1.3e-82 310.8 197 81.7
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 2.3e-79 300.1 342 49.7
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 8.6e-79 298.1 201 74.1
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 1.0e-71 274.6 224 63.4
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.7e-63 247.3 147 83.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.3e-58 231.1 181 64.1
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 6.4e-58 228.8 132 84.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 2.4e-57 226.9 286 46.5
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 5.6e-54 215.7 253 50.6
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 2.0e-51 207.2 116 88.8
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.4e-49 199.1 121 80.2
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 7.8e-48 195.3 138 71.0
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 5.1e-47 192.6 127 78.0
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 5.1e-47 192.6 127 78.0
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 9.6e-46 188.3 199 53.8
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 9.6e-46 188.3 319 38.9
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.4e-44 184.5 121 74.4
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 2.4e-44 183.7 163 56.4
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 5.2e-44 182.6 123 75.6
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.3e-39 167.9 153 65.4
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.7e-39 167.5 163 58.3
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 6.9e-36 155.6 87 87.4
FAN08G1090 Fragaria x ananassa HOM05D005534 ORTHO05D006642 1.3e-34 151.4 105 74.3
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 3.3e-22 110.2 116 55.2
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 2.0e-19 100.9 82 59.8
unitig_899.g15651 Utricularia gibba HOM05D005534 ORTHO05D006642 3.8e-18 96.7 78 61.5
CAN.G1062.3 Capsicum annuum HOM05D005534 ORTHO05D006642 4.2e-17 93.2 140 40.7
A07p14200 Brassica napus HOM05D002040 ORTHO05D006642 2.3e-15 87.4 81 55.6
Lj1E297T0 Lonicera japonica HOM05D005534 ORTHO05D006642 3.3e-14 83.6 62 62.9
HanXRQChr11g0339001 Helianthus annuus HOM05D005534 ORTHO05D006642 7.4e-14 82.4 62 66.1
Lj1A290G37 Lonicera japonica HOM05D005534 ORTHO05D006642 7.4e-14 82.4 74 56.8
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 7.4e-14 82.4 110 43.6
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 2.2e-13 80.9 58 69.0
HPP92_005611 Vanilla planifolia HOM05D000010 ORTHO05D429468 2.6e-11 73.9 54 66.7
Lj1A290T43 Lonicera japonica HOM05D005534 ORTHO05D006642 1.9e-09 67.8 36 83.3
BraA07t29177Z Brassica rapa HOM05D005534 ORTHO05D006642 4.2e-09 66.6 141 34.0
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 4.3e-06 56.6 43 72.1


User provided reference genes

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