Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 1.1e-57 226.5 120 100.0
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.4e-44 183.0 120 84.2
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 5.0e-42 174.5 120 79.2
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 1.0e-31 140.2 121 66.1
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 2.6e-30 135.6 121 63.6
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 2.6e-30 135.6 121 63.6
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 5.7e-30 134.4 121 62.8
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.4e-23 113.2 103 59.2
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 2.3e-23 112.5 83 74.7
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 2.3e-23 112.5 103 59.2
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 3.0e-23 112.1 123 57.7
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 3.3e-22 108.6 113 54.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.3e-22 108.6 113 59.3
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 5.7e-22 107.8 120 55.0
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 5.7e-22 107.8 75 74.7
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 7.5e-22 107.5 114 54.4
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 7.5e-22 107.5 119 52.1
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 1.7e-21 106.3 109 54.1
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 2.2e-21 105.9 118 54.2
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 2.8e-21 105.5 70 72.9
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 2.8e-21 105.5 116 55.2
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 3.7e-21 105.1 112 56.2
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 3.7e-21 105.1 113 56.6
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 3.7e-21 105.1 113 55.8
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 3.7e-21 105.1 111 53.2
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 3.7e-21 105.1 113 55.8
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 4.8e-21 104.8 110 56.4
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 4.8e-21 104.8 110 56.4
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 4.8e-21 104.8 109 56.9
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 4.8e-21 104.8 114 54.4
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 6.3e-21 104.4 110 57.3
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 6.3e-21 104.4 113 56.6
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 6.3e-21 104.4 115 53.9
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 6.3e-21 104.4 112 56.2
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 6.3e-21 104.4 113 54.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 8.3e-21 104.0 113 56.6
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 8.3e-21 104.0 113 54.9
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.8e-20 102.8 112 57.1
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.8e-20 102.8 109 56.0
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.8e-20 102.8 110 57.3
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.8e-20 102.8 105 58.1
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 3.1e-20 102.1 112 56.2
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 3.1e-20 102.1 82 65.9
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 4.1e-20 101.7 64 75.0
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 4.1e-20 101.7 64 75.0
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 7.0e-20 100.9 121 53.7
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 9.1e-20 100.5 105 58.1
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 9.1e-20 100.5 112 53.6
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 9.1e-20 100.5 109 56.0
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.2e-19 100.1 121 52.9
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.6e-19 99.8 113 53.1
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.6e-19 99.8 120 51.7
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 2.0e-19 99.4 112 51.8
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 2.0e-19 99.4 54 85.2
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 2.7e-19 99.0 58 77.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 3.5e-19 98.6 129 48.1
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 7.7e-19 97.4 111 52.3
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.7e-18 96.3 57 77.2
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.2e-18 95.9 71 67.6
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 3.8e-18 95.1 118 51.7
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 5.0e-18 94.7 117 52.1
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 6.5e-18 94.4 108 50.9
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 6.5e-18 94.4 73 65.8
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 6.5e-18 94.4 103 51.5
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 6.5e-18 94.4 117 49.6
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.1e-17 93.6 117 49.6
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 1.9e-17 92.8 119 46.2
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 2.5e-17 92.4 112 52.7
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 2.5e-17 92.4 102 58.8
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 2.5e-17 92.4 73 64.4
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.5e-17 92.4 76 57.9
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 4.2e-17 91.7 108 50.9
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 5.5e-17 91.3 113 53.1
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 7.2e-17 90.9 117 48.7
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.2e-16 90.1 119 50.4
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.2e-16 90.1 115 51.3
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.6e-16 89.7 108 48.1
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 2.7e-16 89.0 115 48.7
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 2.7e-16 89.0 92 54.3
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 3.6e-16 88.6 88 54.5
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 6.1e-16 87.8 70 67.1
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.0e-15 87.0 68 64.7
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.4e-15 86.7 65 67.7
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.4e-15 86.7 115 49.6
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.4e-15 86.7 115 49.6
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.8e-15 86.3 87 56.3
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.8e-15 86.3 72 61.1
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.0e-15 85.5 120 46.7
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 4.0e-15 85.1 48 75.0
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 4.0e-15 85.1 120 46.7
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 4.0e-15 85.1 120 48.3
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 5.2e-15 84.7 69 60.9
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 6.8e-15 84.3 69 59.4
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 2.6e-14 82.4 115 41.7
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.6e-14 82.4 105 51.4
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 1.7e-13 79.7 65 60.0
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 2.8e-13 79.0 89 51.7
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 2.8e-13 79.0 71 57.7
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 1.1e-12 77.0 120 42.5
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 1.8e-12 76.3 110 48.2
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 1.8e-12 76.3 110 48.2
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 4.1e-12 75.1 70 58.6
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 5.4e-12 74.7 70 58.6
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 9.1e-12 73.9 107 50.5
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 9.1e-12 73.9 70 58.6
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 2.3e-10 69.3 87 48.3
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 9.5e-09 63.9 69 56.5
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 3.6e-08 62.0 42 64.3
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-07 60.5 112 43.8
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.2e-06 57.0 47 59.6
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.6e-06 55.8 97 46.4
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 2.6e-06 55.8 50 62.0
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 3.4e-06 55.5 37 67.6


User provided reference genes

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