Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1206600 Malus domestica HOM05D006739 ORTHO05D008402 1.7e-101 374.4 251 100.0
MD15G1390100 Malus domestica HOM05D006739 ORTHO05D008402 6.0e-83 312.8 251 88.0
Prupe.1G539000 Prunus persica HOM05D006739 ORTHO05D008402 7.6e-70 269.2 251 79.3
RcHm_v2.0_Chr7g0233521 Rosa chinensis HOM05D006739 ORTHO05D008402 8.1e-64 249.2 170 72.4
FAN08G0673 Fragaria x ananassa HOM05D006739 ORTHO05D008402 4.6e-59 233.4 251 73.3
FvH4_5g34030 Fragaria vesca HOM05D006739 ORTHO05D008402 3.9e-58 230.3 251 72.5
FAN18G3137 Fragaria x ananassa HOM05D006739 ORTHO05D008402 3.9e-58 230.3 251 72.5
Haze_22495 Corylus avellana HOM05D006739 ORTHO05D008402 1.3e-53 215.3 182 62.1
Cfa013823 Carpinus fangiana HOM05D006739 ORTHO05D008402 4.9e-53 213.4 182 61.5
Dinv44882 Davidia involucrata HOM05D006739 ORTHO05D008402 1.5e-46 191.8 171 62.6
CiPaw.08G057600 Carya illinoinensis HOM05D006739 ORTHO05D008402 3.2e-44 184.1 192 55.2
CSS0036090 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 1.3e-42 178.7 184 56.5
Eucgr.F02164 Eucalyptus grandis HOM05D006739 ORTHO05D008402 5.1e-42 176.8 184 56.0
Ciclev10000605m.g Citrus clementina HOM05D006739 ORTHO05D008402 6.7e-42 176.4 181 53.0
Hma1.2p1_0010F.1_g006410 Hydrangea macrophylla HOM05D006739 ORTHO05D008402 5.7e-41 173.3 181 58.0
QL12p039876 Quercus lobata HOM05D006739 ORTHO05D008402 1.4e-39 168.7 180 55.0
Atru.chr13.953 Acer truncatum HOM05D006739 ORTHO05D008402 1.8e-39 168.3 189 53.4
CSS0033703 Camellia sinensis var. sinensis HOM05D006739 ORTHO05D008402 2.0e-38 164.9 175 55.4
Sabra02G0086200 Salix brachista HOM05D006739 ORTHO05D008402 6.1e-35 153.3 165 50.9
TWI56G0071 Tripterygium wilfordii HOM05D006739 ORTHO05D008402 7.9e-35 152.9 171 52.0
TAR628G0153 Trochodendron aralioides HOM05D006739 ORTHO05D008402 2.5e-33 147.9 175 51.4
TAR152G0001 Trochodendron aralioides HOM05D006739 ORTHO05D008402 3.3e-33 147.5 189 48.7
Potri.002G109500 Populus trichocarpa HOM05D006739 ORTHO05D008402 5.7e-33 146.7 165 49.7
DCAR_019326 Daucus carota HOM05D006739 ORTHO05D008402 1.7e-32 145.2 181 46.4
Manes.05G187600 Manihot esculenta HOM05D006739 ORTHO05D008402 1.8e-31 141.7 175 48.6
Rhsim07G0214200 Rhododendron simsii HOM05D006739 ORTHO05D008402 5.3e-31 140.2 170 51.2
Nitab4.5_0002667g0060 Nicotiana tabacum HOM05D006739 ORTHO05D008402 7.7e-30 136.3 168 50.0
Sc15g0003370 Simmondsia chinensis HOM05D006739 ORTHO05D008402 1.3e-29 135.6 177 46.9
Migut.N00013 Erythranthe guttata HOM05D006739 ORTHO05D008402 3.8e-29 134.0 172 48.8
Lsat_1_v5_gn_1_781 Lactuca sativa HOM05D006739 ORTHO05D008402 1.4e-28 132.1 169 45.6
Nitab4.5_0002667g0050 Nicotiana tabacum HOM05D006739 ORTHO05D008402 1.4e-28 132.1 163 49.7
ECA247G1663 Erigeron canadensis HOM05D006739 ORTHO05D008402 4.2e-28 130.6 164 43.9
Duzib093G0111 Durio zibethinus HOM05D006739 ORTHO05D008402 2.1e-27 128.3 179 45.3
MBI16_g36544_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 2.1e-27 128.3 168 45.8
EL10Ac1g00466 Beta vulgaris HOM05D006739 ORTHO05D008402 3.6e-27 127.5 170 44.1
ClCG08G011830 Citrullus lanatus HOM05D006739 ORTHO05D008402 6.1e-27 126.7 161 49.7
CANSAT25G1844 Cannabis sativa HOM05D006739 ORTHO05D008402 1.4e-26 125.6 160 45.0
MSTRG.24837 Avicennia marina HOM05D006739 ORTHO05D008402 3.0e-26 124.4 174 47.7
Phvul.009G145100 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 3.0e-26 124.4 173 46.2
Sed0004950 Sechium edule HOM05D006739 ORTHO05D008402 3.9e-26 124.0 163 46.0
VMungo1309G0048 Vigna mungo HOM05D006739 ORTHO05D008402 3.9e-26 124.0 173 46.8
TAR381G0861 Trochodendron aralioides HOM05D006739 ORTHO05D008402 8.8e-26 122.9 180 45.6
Thecc.08G075400 Theobroma cacao HOM05D006739 ORTHO05D008402 2.0e-25 121.7 167 45.5
COL.COLO4_35303 Corchorus olitorius HOM05D006739 ORTHO05D008402 3.3e-25 120.9 165 46.1
vmacro04630 Vaccinium macrocarpon HOM05D006739 ORTHO05D008402 5.7e-25 120.2 172 48.3
MELO3C011106.2 Cucumis melo HOM05D006739 ORTHO05D008402 1.3e-24 119.0 171 46.8
CsaV3_2G030450 Cucumis sativus L. HOM05D006739 ORTHO05D008402 1.3e-24 119.0 172 44.2
Peaxi162Scf01212g00003 Petunia axillaris HOM05D006739 ORTHO05D008402 1.3e-24 119.0 162 44.4
Glyma.06G092600 Glycine max HOM05D006739 ORTHO05D008402 3.7e-24 117.5 173 44.5
THA.LOC104816789 Tarenaya hassleriana HOM05D006739 ORTHO05D008402 1.1e-23 115.9 168 43.5
Glyma.04G090900 Glycine max HOM05D006739 ORTHO05D008402 1.4e-23 115.5 100 60.0
VMungo0647G0534 Vigna mungo HOM05D006739 ORTHO05D008402 2.4e-23 114.8 230 43.5
Hund26855 Selenicereus undatus HOM05D006739 ORTHO05D008402 3.1e-23 114.4 178 42.1
AT1G09900 Arabidopsis thaliana HOM05D006739 ORTHO05D008402 4.1e-23 114.0 172 43.0
Gorai.010G032500 Gossypium raimondii HOM05D006739 ORTHO05D008402 7.0e-23 113.2 165 43.6
Actinidia19611 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.2e-22 112.5 155 47.1
Aa31LG1G4990 Aethionema arabicum HOM05D006739 ORTHO05D008402 1.2e-22 112.5 90 63.3
Gohir.A06G030375 Gossypium hirsutum HOM05D006739 ORTHO05D008402 1.6e-22 112.1 165 43.0
Lj1g0027306 Lotus japonicus HOM05D006739 ORTHO05D008402 1.6e-22 112.1 171 44.4
Carub.0001s0928 Capsella rubella HOM05D006739 ORTHO05D008402 2.0e-22 111.7 173 42.8
Sopen06g003030 Solanum pennellii HOM05D006739 ORTHO05D008402 3.5e-22 110.9 202 37.6
PGSC0003DMG400014713 Solanum tuberosum HOM05D006739 ORTHO05D008402 4.5e-22 110.5 206 37.4
PGSC0003DMG400027357 Solanum tuberosum HOM05D006739 ORTHO05D008402 4.5e-22 110.5 206 37.4
PSO761G0270 Papaver somniferum HOM05D006739 ORTHO05D008402 1.0e-21 109.4 167 40.1
Sp1g08530 Schrenkiella parvula HOM05D006739 ORTHO05D008402 1.3e-21 109.0 174 41.4
Duzib116G0618 Durio zibethinus HOM05D006739 ORTHO05D008402 1.7e-21 108.6 165 41.8
Phvul.008G183900 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 2.2e-21 108.2 184 64.7
HanXRQChr11g0324241 Helianthus annuus HOM05D006739 ORTHO05D008402 2.9e-21 107.8 164 42.1
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 6.5e-21 106.7 206 48.5
arahy.Tifrunner.gnm1.ann1.CH37P4 Arachis hypogaea HOM05D006739 ORTHO05D008402 6.5e-21 106.7 235 44.7
Hund26854 Selenicereus undatus HOM05D006739 ORTHO05D008402 6.5e-21 106.7 182 37.9
DCAR_012846 Daucus carota HOM05D006739 ORTHO05D008402 1.5e-20 105.5 177 39.5
Phvul.008G184000 Phaseolus vulgaris HOM05D006739 ORTHO05D008402 1.5e-20 105.5 133 48.9
Hund26833 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.5e-20 105.5 157 43.3
Ah.05g171720 Amaranthus hybridus HOM05D006739 ORTHO05D008402 3.2e-20 104.4 165 41.2
PSO700G0042 Papaver somniferum HOM05D006739 ORTHO05D008402 4.2e-20 104.0 98 58.2
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 5.5e-20 103.6 226 34.5
CARHR009960 Cardamine hirsuta HOM05D006739 ORTHO05D008402 5.5e-20 103.6 171 40.9
AL1G20500 Arabidopsis lyrata HOM05D006739 ORTHO05D008402 7.2e-20 103.2 171 40.4
VMungo0647G1229 Vigna mungo HOM05D006739 ORTHO05D008402 7.2e-20 103.2 177 57.1
Oeu020282.1 Olea europaea HOM05D006739 ORTHO05D008402 9.4e-20 102.8 72 70.8
Glyma.02G216900 Glycine max HOM05D006739 ORTHO05D008402 1.6e-19 102.1 100 54.0
SalBow5G4649 Salvia bowleyana HOM05D006739 ORTHO05D008402 2.7e-19 101.3 162 43.2
Gohir.D06G029600 Gossypium hirsutum HOM05D006739 ORTHO05D008402 3.6e-19 100.9 94 59.6
Aqoxy5G01872 Aquilegia oxysepala HOM05D006739 ORTHO05D008402 6.1e-19 100.1 174 41.4
AUR62014385 Chenopodium quinoa HOM05D006739 ORTHO05D008402 1.8e-18 98.6 117 49.6
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.0e-18 97.8 139 45.3
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 3.0e-18 97.8 139 45.3
Glyma.14G184200 Glycine max HOM05D006739 ORTHO05D008402 4.0e-18 97.4 106 52.8
BcaC05g24834 Brassica carinata HOM05D006739 ORTHO05D008402 6.7e-18 96.7 175 39.4
A06p06610 Brassica napus HOM05D006739 ORTHO05D008402 1.5e-17 95.5 109 53.2
BraA06t23875Z Brassica rapa HOM05D006739 ORTHO05D008402 2.0e-17 95.1 109 53.2
Hund26853 Selenicereus undatus HOM05D006739 ORTHO05D008402 2.0e-17 95.1 159 39.6
ATR0800G015 Amborella trichopoda HOM05D006739 ORTHO05D008402 2.6e-17 94.7 113 48.7
C05p08020 Brassica napus HOM05D006739 ORTHO05D008402 3.3e-17 94.4 109 50.5
BolC5t29554H Brassica oleracea HOM05D006739 ORTHO05D008402 3.3e-17 94.4 109 52.3
AUR62019126 Chenopodium quinoa HOM05D006739 ORTHO05D008402 4.4e-17 94.0 77 61.0
PGR042G0142 Punica granatum HOM05D006739 ORTHO05D008402 9.7e-17 92.8 78 62.8
Cpa.g.sc177.11 Carica papaya HOM05D006739 ORTHO05D008402 6.3e-16 90.1 131 41.2
Hund26842 Selenicereus undatus HOM05D006739 ORTHO05D008402 1.0e-13 82.8 98 46.9
Ca_15539_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 1.7e-13 82.0 88 50.0
CAN.G941.26 Capsicum annuum HOM05D006739 ORTHO05D008402 1.5e-12 79.0 43 83.7
SGA_v2.0_scaffold123G33426 Striga asiatica HOM05D006739 ORTHO05D008402 1.5e-12 79.0 160 36.2
CDE04G0064 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 7.2e-12 76.6 102 46.1
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 1.2e-11 75.9 102 46.1
Glyma.14G184300 Glycine max HOM05D006739 ORTHO05D008402 1.2e-09 69.3 209 30.1
CDE07G2071 Ceratophyllum demersum HOM05D006739 ORTHO05D008402 2.0e-09 68.6 100 44.0
TPR.G15758 Trifolium pratense HOM05D000069 ORTHO05D001849 7.5e-09 66.6 58 53.4
Psat5g018720 Pisum sativum HOM05D006739 ORTHO05D008402 9.8e-09 66.2 86 44.2
Oeu012210.1 Olea europaea HOM05D006739 ORTHO05D008402 1.3e-08 65.9 35 82.9
Actinidia19612 Actinidia chinensis HOM05D006739 ORTHO05D008402 1.7e-08 65.5 109 77.1
Dinv22007 Davidia involucrata HOM05D006739 ORTHO05D008402 6.3e-08 63.5 35 77.1
Cc10_g08260 Coffea canephora HOM05D008425 ORTHO05D010555 1.1e-07 62.8 33 78.8
HPP92_004375 Vanilla planifolia HOM05D006739 ORTHO05D008402 1.4e-07 62.4 59 52.5
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.8e-07 62.0 123 30.9
TPR.G12357 Trifolium pratense HOM05D006739 ORTHO05D008402 9.1e-07 59.7 89 38.2
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.2e-06 59.3 77 40.3
HPP92_004376 Vanilla planifolia HOM05D006739 ORTHO05D008402 4.5e-06 57.4 59 49.2
CDE01G0171 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 5.9e-06 57.0 55 41.8
MBI16_g14339_MAGBIO Magnolia biondii HOM05D006739 ORTHO05D008402 5.9e-06 57.0 109 72.5
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 7.7e-06 56.6 67 40.3
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 7.7e-06 56.6 64 43.8
Lalb_Chr08g0242631 Lupinus albus HOM05D006739 ORTHO05D008402 7.7e-06 56.6 34 82.4
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 7.7e-06 56.6 81 42.0


User provided reference genes

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