Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 3.0e-38 161.4 84 100.0
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 3.0e-25 118.2 68 88.2
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 5.8e-21 104.0 66 78.8
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 3.2e-19 98.2 66 75.8
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 9.2e-19 96.7 66 75.8
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.6e-18 95.9 66 77.3
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.6e-18 95.9 66 77.3
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 4.6e-18 94.4 67 70.1
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 1.3e-17 92.8 70 67.1
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 1.3e-17 92.8 65 72.3
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 3.0e-17 91.7 66 69.7
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 5.1e-17 90.9 70 67.1
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 1.1e-16 89.7 65 67.7
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 1.5e-16 89.4 70 65.7
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.5e-16 89.4 67 65.7
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.9e-16 89.0 66 68.2
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.5e-16 88.6 66 68.2
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 3.3e-16 88.2 66 66.7
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 9.5e-16 86.7 66 66.7
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.2e-15 86.3 70 62.9
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 1.6e-15 85.9 65 67.7
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 2.8e-15 85.1 67 64.2
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 2.8e-15 85.1 66 65.2
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 2.8e-15 85.1 69 62.3
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 3.6e-15 84.7 66 63.6
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.6e-15 84.7 60 71.7
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 4.7e-15 84.3 70 61.4
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 4.7e-15 84.3 65 66.2
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 6.2e-15 84.0 65 63.1
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 8.1e-15 83.6 65 66.2
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 8.1e-15 83.6 66 63.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-14 82.8 95 52.6
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.4e-14 82.8 95 52.6
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 2.4e-14 82.0 68 61.8
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.4e-14 82.0 66 65.2
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 2.4e-14 82.0 66 65.2
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 3.1e-14 81.6 65 66.2
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 4.0e-14 81.3 69 62.3
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 4.0e-14 81.3 65 66.2
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 5.2e-14 80.9 68 60.3
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 5.2e-14 80.9 66 60.6
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 8.9e-14 80.1 70 57.1
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 8.9e-14 80.1 68 60.3
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.9e-14 80.1 71 60.6
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 1.2e-13 79.7 66 62.1
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 2.0e-13 79.0 70 55.7
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 2.0e-13 79.0 70 57.1
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 2.6e-13 78.6 70 55.7
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.6e-13 78.6 69 60.9
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.6e-13 78.6 66 63.6
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 4.4e-13 77.8 66 63.6
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 5.8e-13 77.4 70 55.7
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 7.6e-13 77.0 70 54.3
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 7.6e-13 77.0 70 54.3
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 9.9e-13 76.6 70 54.3
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 1.7e-12 75.9 70 54.3
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 2.2e-12 75.5 70 54.3
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 2.9e-12 75.1 65 61.5
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 6.4e-12 73.9 66 54.5
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 6.4e-12 73.9 65 60.0
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 8.4e-12 73.6 64 60.9
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 8.4e-12 73.6 62 62.9
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 1.1e-11 73.2 70 54.3
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 1.4e-11 72.8 66 59.1
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.4e-11 72.8 63 60.3
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.4e-11 72.8 64 59.4
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.9e-11 72.4 70 48.6
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 2.4e-11 72.0 63 58.7
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 4.1e-11 71.2 66 56.1
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.4e-11 70.9 65 56.9
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 9.2e-11 70.1 45 75.6
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.2e-10 69.7 52 65.4
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.6e-10 69.3 63 57.1
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 1.6e-10 69.3 65 55.4
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 2.1e-10 68.9 66 56.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.5e-10 68.2 68 55.9
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 1.3e-09 66.2 63 54.0
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 3.0e-09 65.1 102 39.2
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 5.1e-09 64.3 70 47.1
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 8.7e-09 63.5 70 47.1
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 5.6e-08 60.8 62 50.0
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 9.6e-08 60.1 62 50.0
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 2.4e-06 55.5 67 47.8


User provided reference genes

Program Settings