Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 1.2e-103 379.8 189 100.0
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.0e-57 227.3 125 88.0
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-32 142.9 79 83.5
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 5.6e-32 141.7 79 83.5
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.8e-31 139.4 79 83.5
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.6e-29 132.9 100 64.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-28 130.6 82 74.4
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.7e-28 130.2 79 75.9
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 2.2e-28 129.8 79 77.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.1e-27 127.5 79 74.7
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-27 127.5 79 74.7
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-27 127.5 79 74.7
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-27 127.5 79 74.7
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 1.0e-25 120.9 79 72.2
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 3.9e-25 119.0 81 72.8
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.5e-24 117.1 73 72.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.5e-24 116.3 79 69.6
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.5e-24 116.3 79 69.6
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.8e-23 112.8 79 67.1
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.8e-23 112.1 85 61.2
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.2e-23 111.7 73 69.9
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 8.1e-23 111.3 96 58.3
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 8.1e-23 111.3 68 75.0
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.1e-22 110.9 79 65.8
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.4e-22 110.5 79 67.1
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 2.4e-22 109.8 79 69.6
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.4e-22 109.8 79 65.8
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.1e-22 109.4 70 71.4
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.0e-22 109.0 79 65.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 4.0e-22 109.0 79 68.4
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 5.3e-22 108.6 70 65.7
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 5.3e-22 108.6 66 71.2
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 6.9e-22 108.2 79 63.3
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 6.9e-22 108.2 79 62.0
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 9.0e-22 107.8 80 65.0
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 9.0e-22 107.8 71 69.0
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.2e-21 107.5 79 68.4
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.2e-21 107.5 75 65.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.2e-21 107.5 71 70.4
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.2e-21 107.5 70 64.3
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-21 107.1 73 65.8
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.6e-21 106.3 79 65.8
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.4e-21 105.9 96 56.2
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.5e-21 105.5 79 67.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.5e-21 105.5 79 67.1
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 4.5e-21 105.5 70 62.9
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.5e-21 105.5 85 56.5
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.5e-21 105.5 68 69.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-21 105.1 79 60.8
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 5.8e-21 105.1 79 64.6
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.8e-21 105.1 79 63.3
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.6e-21 104.8 68 63.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 9.9e-21 104.4 79 63.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 9.9e-21 104.4 79 63.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.3e-20 104.0 72 63.9
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.3e-20 104.0 79 60.8
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-20 104.0 79 64.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.3e-20 104.0 79 64.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.7e-20 103.6 74 62.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-20 103.6 72 62.5
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.7e-20 103.6 70 65.7
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 2.2e-20 103.2 72 62.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.2e-20 103.2 79 62.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-20 103.2 70 65.7
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 2.2e-20 103.2 66 66.7
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.2e-20 103.2 79 62.0
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 2.2e-20 103.2 67 68.7
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 2.2e-20 103.2 79 65.8
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.9e-20 102.8 76 61.8
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.9e-20 102.8 79 60.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.9e-20 102.8 79 60.8
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 3.8e-20 102.4 79 62.0
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-20 102.4 76 60.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 3.8e-20 102.4 79 62.0
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 3.8e-20 102.4 76 60.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.9e-20 102.1 66 69.7
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-20 102.1 76 60.5
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 4.9e-20 102.1 70 62.9
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 6.4e-20 101.7 79 60.8
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 8.4e-20 101.3 61 73.8
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 8.4e-20 101.3 79 63.3
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 8.4e-20 101.3 79 63.3
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 8.4e-20 101.3 79 63.3
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 8.4e-20 101.3 79 62.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 8.4e-20 101.3 70 61.4
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 8.4e-20 101.3 79 64.6
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.1e-19 100.9 73 67.1
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.4e-19 100.5 79 62.0
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.4e-19 100.5 79 59.5
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.4e-19 100.5 94 57.4
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.9e-19 100.1 79 59.5
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 1.9e-19 100.1 79 59.5
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.5e-19 99.8 64 70.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.5e-19 99.8 70 62.9
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 2.5e-19 99.8 70 62.9
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.2e-19 99.4 64 70.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 3.2e-19 99.4 68 64.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 3.2e-19 99.4 79 62.0
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 3.2e-19 99.4 66 66.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 4.2e-19 99.0 79 62.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.2e-19 99.0 68 66.2
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.5e-19 98.6 79 60.8
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.1e-19 98.2 79 59.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 7.1e-19 98.2 79 59.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 9.3e-19 97.8 64 67.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.6e-18 97.1 79 57.0
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 2.1e-18 96.7 66 63.6
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-18 96.7 72 55.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-18 96.7 72 55.6
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.1e-18 96.7 66 63.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 2.7e-18 96.3 70 61.4
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.7e-18 96.3 66 63.6
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 3.5e-18 95.9 79 59.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 4.6e-18 95.5 79 60.8
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 6.0e-18 95.1 64 68.8
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 6.0e-18 95.1 74 58.1
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 7.9e-18 94.7 73 61.6
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.3e-17 94.0 76 56.6
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.9e-17 92.4 79 59.5
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 6.7e-17 91.7 64 62.5
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 8.7e-17 91.3 64 65.6
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 1.5e-16 90.5 64 64.1
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 3.3e-16 89.4 64 59.4
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 4.3e-16 89.0 64 64.1
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 4.3e-16 89.0 55 70.9
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 5.6e-16 88.6 59 69.5
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 1.6e-15 87.0 55 67.3
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.8e-15 86.3 71 57.7
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.1e-14 84.3 53 69.8
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-14 83.6 63 63.5
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.8e-14 83.6 55 69.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 4.0e-14 82.4 75 53.3
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 5.3e-14 82.0 70 58.6
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 5.3e-14 82.0 75 53.3
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.3e-14 82.0 55 67.3
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 9.0e-14 81.3 53 67.9
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 9.0e-14 81.3 57 61.4
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-13 80.9 54 66.7
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.0e-13 80.1 54 66.7
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 5.8e-13 78.6 92 47.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 7.6e-13 78.2 64 54.7
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.9e-12 76.3 64 53.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.9e-12 76.3 64 53.1
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.8e-12 75.9 53 64.2
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 2.5e-11 73.2 55 60.0
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.2e-11 72.8 64 54.7
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 2.1e-10 70.1 64 46.9
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.5e-10 69.3 42 71.4
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 3.5e-10 69.3 49 63.3
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.6e-10 68.9 62 59.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 6.1e-10 68.6 48 62.5
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 6.1e-10 68.6 60 56.7
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.3e-07 60.8 65 46.2
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.2e-07 60.1 40 60.0
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.7e-07 59.3 110 36.4
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.1e-06 57.8 65 44.6
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 5.3e-06 55.5 80 40.0


User provided reference genes

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