Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1189600 Malus domestica HOM05D000142 ORTHO05D003173 6.8e-40 166.8 79 100.0
MD08G1189900 Malus domestica HOM05D000142 ORTHO05D003173 1.7e-19 99.0 49 93.9
Prupe.1G523800 Prunus persica HOM05D000142 ORTHO05D003173 4.3e-18 94.4 49 85.7
FAN08G0302 Fragaria x ananassa HOM05D000142 ORTHO05D003173 2.3e-11 72.0 48 70.8
FvH4_5g36390 Fragaria vesca HOM05D000142 ORTHO05D003173 3.9e-11 71.2 48 70.8
FAN04G2990 Fragaria x ananassa HOM05D000142 ORTHO05D003173 3.9e-11 71.2 48 70.8
FAN18G3254 Fragaria x ananassa HOM05D000142 ORTHO05D003173 3.9e-11 71.2 48 70.8
FAN13G0478 Fragaria x ananassa HOM05D000142 ORTHO05D003173 6.7e-11 70.5 48 72.9
RcHm_v2.0_Chr7g0238361 Rosa chinensis HOM05D000142 ORTHO05D003173 8.7e-11 70.1 48 68.8
Lalb_Chr23g0270221 Lupinus albus HOM05D000142 ORTHO05D003173 1.9e-10 68.9 48 66.7
Lalb_Chr23g0270321 Lupinus albus HOM05D000142 ORTHO05D003173 1.9e-10 68.9 48 66.7
Lj1g0017532 Lotus japonicus HOM05D000142 ORTHO05D003173 2.5e-10 68.6 47 66.0
Glyma.06G100200 Glycine max HOM05D000142 ORTHO05D003173 7.4e-10 67.0 47 68.1
Medtr3g099590 Medicago truncatula HOM05D000142 ORTHO05D003173 7.4e-10 67.0 47 66.0
QL02p002278 Quercus lobata HOM05D000142 ORTHO05D003173 1.6e-09 65.9 47 61.7
Glyma.04G098600 Glycine max HOM05D000142 ORTHO05D003173 3.7e-09 64.7 47 68.1
VMungo1309G2392 Vigna mungo HOM05D000142 ORTHO05D003173 4.8e-09 64.3 48 68.8
CiPaw.15G045300 Carya illinoinensis HOM05D000142 ORTHO05D003173 6.2e-09 63.9 49 61.2
arahy.Tifrunner.gnm1.ann1.DQ4GV3 Arachis hypogaea HOM05D000142 ORTHO05D003173 8.1e-09 63.5 47 63.8
arahy.Tifrunner.gnm1.ann1.X035RS Arachis hypogaea HOM05D000142 ORTHO05D003173 8.1e-09 63.5 47 63.8
Lalb_Chr11g0065251 Lupinus albus HOM05D000142 ORTHO05D003173 1.4e-08 62.8 50 62.0
Ca_16034_v3 Cicer arietinum L. HOM05D000142 ORTHO05D003173 1.8e-08 62.4 47 66.0
TPR.G6340 Trifolium pratense HOM05D000142 ORTHO05D003173 3.1e-08 61.6 47 63.8
CiPaw.16G032600 Carya illinoinensis HOM05D000142 ORTHO05D003173 4.0e-08 61.2 49 59.2
MD15G1377200 Malus domestica HOM05D000142 ORTHO05D003173 4.0e-08 61.2 32 84.4
Phvul.009G033600 Phaseolus vulgaris HOM05D000142 ORTHO05D003173 4.0e-08 61.2 47 59.6
Atru.chr10.807 Acer truncatum HOM05D000142 ORTHO05D003173 5.3e-08 60.8 47 59.6
Cfa017897 Carpinus fangiana HOM05D000142 ORTHO05D003173 6.9e-08 60.5 49 57.1
Haze_18253 Corylus avellana HOM05D000142 ORTHO05D003173 6.9e-08 60.5 48 60.4
MELO3C003546.2 Cucumis melo HOM05D000142 ORTHO05D003173 1.2e-07 59.7 47 57.4
CsaV3_3G047760 Cucumis sativus L. HOM05D000142 ORTHO05D003173 1.2e-07 59.7 47 57.4
Ah.05g169610 Amaranthus hybridus HOM05D000142 ORTHO05D003173 2.0e-07 58.9 47 51.1
Psat5g050360 Pisum sativum HOM05D000142 ORTHO05D003173 2.0e-07 58.9 45 66.7
Sed0024077 Sechium edule HOM05D000142 ORTHO05D003173 2.6e-07 58.5 47 57.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.4e-07 58.2 49 57.1
Eucgr.B00046 Eucalyptus grandis HOM05D000142 ORTHO05D003173 4.5e-07 57.8 48 58.3
AUR62018978 Chenopodium quinoa HOM05D000142 ORTHO05D003173 5.8e-07 57.4 47 53.2
COL.COLO4_12000 Corchorus olitorius HOM05D000142 ORTHO05D003173 5.8e-07 57.4 48 56.2
ClCG11G014360 Citrullus lanatus HOM05D000142 ORTHO05D003173 9.9e-07 56.6 47 55.3
CANSAT25G3832 Cannabis sativa HOM05D000142 ORTHO05D003173 1.3e-06 56.2 49 57.1
PGR031G2006 Punica granatum HOM05D000142 ORTHO05D003173 1.3e-06 56.2 48 56.2
DCAR_012880 Daucus carota HOM05D000142 ORTHO05D003173 1.7e-06 55.8 48 52.1
COL.COLO4_11999 Corchorus olitorius HOM05D000142 ORTHO05D003173 2.2e-06 55.5 48 56.2
EL10Ac1g01139 Beta vulgaris HOM05D000142 ORTHO05D003173 3.8e-06 54.7 47 46.8
AUR62027819 Chenopodium quinoa HOM05D000142 ORTHO05D003173 3.8e-06 54.7 47 51.1
Migut.N02875 Erythranthe guttata HOM05D000142 ORTHO05D003173 3.8e-06 54.7 48 56.2
unitig_22.g5802 Utricularia gibba HOM05D000142 ORTHO05D003173 3.8e-06 54.7 48 56.2
Duzib093G0467 Durio zibethinus HOM05D000142 ORTHO05D003173 4.9e-06 54.3 49 53.1
Sc10g0005170 Simmondsia chinensis HOM05D000142 ORTHO05D003173 4.9e-06 54.3 47 53.2
MSTRG.24440 Avicennia marina HOM05D000142 ORTHO05D003173 6.4e-06 53.9 48 54.2
ECA246G3305 Erigeron canadensis HOM05D000142 ORTHO05D003173 6.4e-06 53.9 48 50.0
Gohir.A01G128000 Gossypium hirsutum HOM05D000142 ORTHO05D003173 6.4e-06 53.9 49 53.1
Thecc.08G101100 Theobroma cacao HOM05D000142 ORTHO05D003173 6.4e-06 53.9 48 56.2
Hma1.2p1_1180F.1_g264690 Hydrangea macrophylla HOM05D000142 ORTHO05D003173 8.4e-06 53.5 47 53.2


User provided reference genes

Program Settings