Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 2.3e-47 191.8 93 100.0
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 9.8e-46 186.4 93 96.8
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 3.3e-41 171.4 93 89.2
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 9.5e-41 169.9 93 88.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.7e-40 167.5 93 86.0
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 8.0e-40 166.8 92 85.9
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.4e-39 166.0 93 84.9
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.8e-39 165.6 93 86.0
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.8e-39 165.6 93 84.9
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 2.3e-39 165.2 93 84.9
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 3.1e-39 164.9 92 84.8
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.1e-39 164.9 93 83.9
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 83.9
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 83.9
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 6.8e-39 163.7 92 84.8
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 84.9
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 6.8e-39 163.7 89 86.5
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 84.9
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 83.9
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.5e-38 162.5 89 85.4
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 82.8
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 82.8
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 82.8
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 82.8
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.4e-38 161.0 93 82.8
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 5.8e-38 160.6 92 81.5
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 81.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 81.7
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 82.8
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.8e-38 160.6 93 82.8
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 81.7
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 81.7
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 83.9
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 81.7
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 81.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 81.7
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 80.6
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.7e-37 157.9 93 80.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.9e-37 157.5 93 79.6
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 6.4e-37 157.1 92 82.6
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 8.3e-37 156.8 87 85.1
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.1e-36 156.4 89 83.1
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.1e-36 156.4 94 81.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.4e-36 156.0 92 82.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.4e-36 155.2 86 87.2
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.2e-36 154.8 85 85.9
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 3.2e-36 154.8 87 81.6
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 3.2e-36 154.8 87 81.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 3.2e-36 154.8 93 80.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.2e-36 154.8 93 78.5
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 4.1e-36 154.5 92 80.4
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 7.0e-36 153.7 94 79.8
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 7.0e-36 153.7 93 77.4
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.2e-36 153.3 93 79.6
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 9.2e-36 153.3 86 83.7
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.2e-36 153.3 93 79.6
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 9.2e-36 153.3 93 78.5
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 9.2e-36 153.3 89 83.1
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.2e-35 152.9 93 79.6
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 93 76.3
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.0e-35 152.1 87 82.8
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.0e-35 152.1 93 77.4
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.0e-35 152.1 89 84.3
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.0e-35 152.1 93 77.4
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 86 84.9
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.7e-35 151.8 92 79.3
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.8e-35 150.2 85 84.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 7.8e-35 150.2 93 75.3
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 7.8e-35 150.2 93 76.3
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 7.8e-35 150.2 93 76.3
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.0e-34 149.8 93 78.5
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 78.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 78.5
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 78.5
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 76.3
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 6.6e-34 147.1 90 76.7
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 6.6e-34 147.1 90 76.7
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 89 77.5
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 76.6
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 79 83.5
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.1e-33 146.4 79 83.5
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.5e-33 145.2 85 78.8
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 3.3e-33 144.8 87 79.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 3.3e-33 144.8 87 79.3
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.6e-33 144.1 88 77.3
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 7.3e-33 143.7 93 73.1
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 7.3e-33 143.7 94 76.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 9.5e-33 143.3 94 74.5
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 9.5e-33 143.3 90 75.6
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.2e-32 142.9 82 79.3
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.2e-32 142.9 88 77.3
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.2e-32 142.9 78 84.6
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 75.5
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.6e-32 142.5 85 77.6
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.6e-32 142.5 85 77.6
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-32 142.1 85 77.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-32 142.1 85 77.6
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 3.6e-32 141.4 91 73.6
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 121 62.0
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 74.5
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 74.5
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 74.5
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 74.5
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 74.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 8.1e-32 140.2 89 74.2
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.1e-31 139.8 90 73.3
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.1e-31 139.8 88 75.0
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.8e-31 139.0 85 77.6
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.3e-31 138.7 93 74.2
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.3e-31 138.7 78 83.3
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 8.9e-31 136.7 85 75.3
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 8.9e-31 136.7 74 86.5
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.2e-30 136.3 92 71.7
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 1.2e-30 136.3 83 79.5
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-30 136.0 78 80.8
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-30 136.0 78 80.8
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-30 136.0 78 80.8
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.4e-30 134.8 89 68.5
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.3e-29 132.9 70 90.0
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.7e-29 132.5 71 90.1
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.7e-29 132.5 70 88.6
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.9e-29 131.7 70 88.6
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.7e-29 131.3 71 85.9
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.7e-29 131.3 89 73.0
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 1.1e-28 129.8 76 80.3
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.4e-28 129.4 70 87.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 7.1e-28 127.1 82 72.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 2.1e-27 125.6 71 80.3
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-27 125.6 87 71.3
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 7.8e-27 123.6 71 84.5
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.6e-26 120.2 71 81.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.5e-25 119.4 116 52.6
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 5.6e-25 117.5 71 80.3
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.1e-24 115.5 93 59.1
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 1.4e-23 112.8 70 81.4
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.4e-23 112.8 91 64.8
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 4.0e-23 111.3 86 68.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.3e-21 106.3 67 70.1
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.1e-20 103.2 82 62.2
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 4.6e-19 97.8 50 88.0
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.0e-19 97.4 98 51.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 3.3e-17 91.7 93 53.8
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.1e-16 89.0 48 85.4
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.1e-16 89.0 82 53.7
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 4.7e-16 87.8 50 80.0
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-16 87.0 58 69.0
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-15 86.7 51 74.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-15 86.7 51 74.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-15 86.7 51 74.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-15 86.7 51 74.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.6e-14 80.5 47 72.3
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.9e-13 77.8 48 72.9
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 3.2e-12 75.1 80 43.8
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 7.1e-12 73.9 47 70.2
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.3e-10 68.9 43 72.1
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 3.6e-08 61.6 56 51.8
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 2.0e-06 55.8 27 92.6


User provided reference genes

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