Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1183800 Malus domestica HOM05D019378 ORTHO05D003172 5.2e-162 574.3 290 100.0
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 2.1e-46 190.3 170 52.4
MD11G1096700 Malus domestica HOM05D019378 ORTHO05D030066 1.2e-28 131.3 257 34.2
RcHm_v2.0_Chr7g0200361 Rosa chinensis HOM05D003861 ORTHO05D003172 7.1e-18 95.5 267 24.7
FvH4_7g00330 Fragaria vesca HOM05D003861 ORTHO05D003172 4.3e-15 86.3 285 25.3
FvH4_5g34730 Fragaria vesca HOM05D003861 ORTHO05D003172 8.1e-14 82.0 287 24.4
SGA_v2.0_scaffold11G05878 Striga asiatica HOM05D001576 ORTHO05D000401 1.1e-13 81.6 266 25.6
SGA_v2.0_scaffold239G43990 Striga asiatica HOM05D001576 ORTHO05D000401 1.1e-13 81.6 266 25.6
FAN19G2630 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.2e-12 78.2 302 27.5
SGA_v2.0_scaffold260G45865 Striga asiatica HOM05D001576 ORTHO05D000401 7.6e-12 75.5 281 27.8
FAN18G3027 Fragaria x ananassa HOM05D003861 ORTHO05D003172 9.9e-12 75.1 235 27.7
TWI38G0149 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 1.3e-11 74.7 122 30.3
FAN19G1778 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.7e-11 74.3 288 26.0
FAN21G0339 Fragaria x ananassa HOM05D003861 ORTHO05D003172 1.7e-11 74.3 191 29.3
SGA_v2.0_scaffold309G48177 Striga asiatica HOM05D001576 ORTHO05D000401 1.7e-11 74.3 281 27.8
SGA_v2.0_scaffold19G08588 Striga asiatica HOM05D001576 ORTHO05D000401 2.9e-11 73.6 261 25.7
RcHm_v2.0_Chr5g0059411 Rosa chinensis HOM05D004516 ORTHO05D005194 3.8e-11 73.2 179 26.3
TWI56G0638 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 3.8e-11 73.2 122 29.5
TWI23G0178 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.9e-11 72.8 122 29.5
TWI56G0559 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.9e-11 72.8 122 29.5
TWI74G1447 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 4.9e-11 72.8 122 29.5
TWI34G0394 Tripterygium wilfordii HOM05D014549 ORTHO05D000401 6.4e-11 72.4 122 30.3
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 8.4e-11 72.0 223 27.8
MD11G1261300 Malus domestica HOM05D019378 ORTHO05D030066 1.1e-10 71.6 143 35.7
FAN19G1462 Fragaria x ananassa HOM05D003861 ORTHO05D003172 2.4e-10 70.5 295 24.1
CSS0002566 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.2e-10 69.7 241 29.5
FAN06G0363 Fragaria x ananassa HOM05D003861 ORTHO05D003172 4.2e-10 69.7 281 23.5
FAN11G2179 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.2e-10 69.7 305 24.6
FAN19G0341 Fragaria x ananassa HOM05D008328 ORTHO05D003172 4.2e-10 69.7 305 24.6
CSS0010386 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.4e-10 69.3 214 27.6
CSS0012194 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 5.4e-10 69.3 214 27.6
FAN01G0661 Fragaria x ananassa HOM05D008328 ORTHO05D003172 5.4e-10 69.3 305 24.6
FAN09G4805 Fragaria x ananassa HOM05D008328 ORTHO05D003172 5.4e-10 69.3 305 24.6
FAN14G2168 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.1e-10 68.9 305 24.6
FAN18G4138 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.1e-10 68.9 305 24.6
FAN21G2808 Fragaria x ananassa HOM05D008328 ORTHO05D003172 7.1e-10 68.9 305 24.6
TWI36G0405 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 7.1e-10 68.9 272 22.8
FAN03G1358 Fragaria x ananassa HOM05D008328 ORTHO05D003172 9.3e-10 68.6 305 24.6
FAN17G3018 Fragaria x ananassa HOM05D008328 ORTHO05D003172 1.2e-09 68.2 305 24.6
Os06g0635500 Oryza sativa ssp. japonica HOM05D001576 ORTHO05D000401 1.2e-09 68.2 219 24.7
Haze_20229 Corylus avellana HOM05D001576 ORTHO05D000401 1.6e-09 67.8 205 27.8
FAN19G1677 Fragaria x ananassa HOM05D008328 ORTHO05D003172 2.1e-09 67.4 305 24.3
TWI74G0405 Tripterygium wilfordii HOM05D001576 ORTHO05D000401 2.1e-09 67.4 272 22.4
CSS0010296 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.7e-09 67.0 214 27.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 2.7e-09 67.0 248 25.8
FAN25G2580 Fragaria x ananassa HOM05D008328 ORTHO05D003172 2.7e-09 67.0 307 25.4
RcHm_v2.0_Chr6g0305091 Rosa chinensis HOM05D004516 ORTHO05D005194 3.5e-09 66.6 183 27.9
CSS0006860 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.6e-09 66.2 213 26.8
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.6e-09 66.2 277 23.1
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 4.6e-09 66.2 277 23.1
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 6.0e-09 65.9 161 27.3
MD12G1048200 Malus domestica HOM05D019378 ORTHO05D030066 7.9e-09 65.5 146 37.7
SGA_v2.0_scaffold167G38458 Striga asiatica HOM05D001576 ORTHO05D000401 7.9e-09 65.5 224 24.6
TWI23G0768 Tripterygium wilfordii HOM05D014549 ORTHO05D005194 1.0e-08 65.1 122 27.9
FAN02G0873 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.3e-08 63.9 301 28.2
FAN18G1278 Fragaria x ananassa HOM05D003861 ORTHO05D003172 2.3e-08 63.9 286 24.1
FAN17G2411 Fragaria x ananassa HOM05D004516 ORTHO05D005194 3.9e-08 63.2 275 21.5
CSS0006547 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 8.7e-08 62.0 118 28.0
FAN25G0543 Fragaria x ananassa HOM05D004516 ORTHO05D005194 8.7e-08 62.0 262 22.9
Rhsim01G0133600 Rhododendron simsii HOM05D001576 ORTHO05D010219 1.1e-07 61.6 243 24.3
FAN25G0522 Fragaria x ananassa HOM05D004516 ORTHO05D005194 1.9e-07 60.8 107 28.0
FAN19G2723 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.5e-07 60.5 256 28.5
Zm00001eb115240 Zea mays HOM05D001563 ORTHO05D000401 2.5e-07 60.5 128 24.2
FvH4_3g29014 Fragaria vesca HOM05D001576 ORTHO05D000401 3.3e-07 60.1 213 23.9
FAN27G0746 Fragaria x ananassa HOM05D006804 ORTHO05D009450 3.3e-07 60.1 301 27.6
FAN08G0036 Fragaria x ananassa HOM05D008328 ORTHO05D003172 5.6e-07 59.3 294 24.1
QL09p040841 Quercus lobata HOM05D001576 ORTHO05D000401 7.4e-07 58.9 263 22.4
FAN08G2218 Fragaria x ananassa HOM05D008328 ORTHO05D003172 9.6e-07 58.5 294 24.1
QL02p093127 Quercus lobata HOM05D001576 ORTHO05D000401 9.6e-07 58.5 214 23.4
BolC6t38535H Brassica oleracea HOM05D000589 ORTHO05D000401 1.3e-06 58.2 119 28.6
FvH4_7g13271 Fragaria vesca HOM05D001576 ORTHO05D000401 1.3e-06 58.2 274 22.6
Prupe.2G097600 Prunus persica HOM05D000003 ORTHO05D000007 1.3e-06 58.2 72 44.4
FAN14G0666 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.1e-06 57.4 239 25.5
FAN23G2251 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.1e-06 57.4 265 25.7
FAN28G0071 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.1e-06 57.4 304 26.3
BolC7t44420H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-06 57.0 230 23.9
BolC9t58423H Brassica oleracea HOM05D000589 ORTHO05D000401 2.8e-06 57.0 206 27.7
FAN05G1258 Fragaria x ananassa HOM05D006804 ORTHO05D009450 2.8e-06 57.0 301 27.2
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 2.8e-06 57.0 297 24.2
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 2.8e-06 57.0 276 25.7
BolC8t47046H Brassica oleracea HOM05D000589 ORTHO05D000401 4.8e-06 56.2 178 25.3
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 8.1e-06 55.5 299 20.4
QL09p033218 Quercus lobata HOM05D001576 ORTHO05D000401 8.1e-06 55.5 122 24.6


User provided reference genes

Program Settings