Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1168800 Malus domestica HOM05D003427 ORTHO05D003927 1.6e-132 476.1 235 100.0
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 3.8e-78 295.4 235 67.2
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 6.3e-73 278.1 240 63.8
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 1.8e-72 276.6 231 64.5
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 2.0e-71 273.1 231 61.5
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 2.0e-71 273.1 231 61.5
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.0e-70 270.8 231 60.6
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 1.7e-70 270.0 231 61.0
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 5.0e-70 268.5 231 61.5
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 3.5e-68 262.3 231 60.2
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 4.6e-68 261.9 232 59.9
MD08G1170500 Malus domestica HOM05D003427 ORTHO05D003927 1.8e-67 260.0 230 62.2
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 2.3e-67 259.6 231 59.3
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 5.7e-66 255.0 234 57.3
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 7.4e-66 254.6 234 56.8
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 6.3e-65 251.5 234 56.8
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 1.8e-64 250.0 193 67.4
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 2.4e-64 249.6 234 57.3
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 3.1e-64 249.2 218 60.6
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 4.5e-63 245.4 234 56.0
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 4.5e-63 245.4 234 56.0
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 5.0e-62 241.9 234 56.4
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 3.2e-61 239.2 251 53.0
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 3.2e-61 239.2 234 54.7
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 4.2e-61 238.8 231 56.3
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 4.2e-61 238.8 234 55.1
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 5.5e-61 238.4 234 54.7
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 9.4e-61 237.7 232 55.2
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 1.6e-60 236.9 234 53.8
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 6.1e-60 235.0 234 56.0
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 7.9e-60 234.6 234 54.7
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 7.9e-60 234.6 233 54.5
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 1.4e-59 233.8 232 53.0
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 2.3e-59 233.0 255 51.0
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 2.3e-59 233.0 234 53.4
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 3.9e-59 232.3 229 55.9
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 3.9e-59 232.3 232 53.4
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 6.7e-59 231.5 233 53.2
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 8.8e-59 231.1 231 55.0
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.1e-58 230.7 193 59.6
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 1.5e-58 230.3 234 53.0
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 1.5e-58 230.3 240 52.9
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 2.0e-58 229.9 233 52.8
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 2.0e-58 229.9 232 53.0
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 7.4e-58 228.0 234 53.0
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 9.7e-58 227.6 234 54.3
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 4.8e-57 225.3 232 52.6
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 6.3e-57 224.9 234 51.7
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 8.2e-57 224.6 232 53.0
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 1.1e-56 224.2 232 53.4
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 1.4e-56 223.8 232 53.9
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.8e-56 223.4 234 52.6
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 2.4e-56 223.0 232 52.6
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 2.4e-56 223.0 203 58.1
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 2.4e-56 223.0 234 51.3
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 6.9e-56 221.5 234 51.3
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 6.9e-56 221.5 234 51.3
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 6.9e-56 221.5 231 51.9
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 2.0e-55 219.9 252 48.4
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 2.6e-55 219.5 238 50.8
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 3.4e-55 219.2 202 55.0
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 4.5e-55 218.8 233 51.5
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 4.5e-55 218.8 235 50.6
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 5.9e-55 218.4 304 44.4
MD05G1028300 Malus domestica HOM05D003427 ORTHO05D003927 7.7e-55 218.0 131 79.4
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 1.0e-54 217.6 254 47.6
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 1.0e-54 217.6 195 56.4
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 1.1e-53 214.2 257 47.5
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 1.9e-53 213.4 235 51.9
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 1.9e-53 213.4 247 49.0
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 2.5e-53 213.0 231 51.5
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 2.5e-53 213.0 234 49.1
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 3.2e-53 212.6 235 50.2
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 3.2e-53 212.6 231 51.5
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 9.4e-53 211.1 234 50.9
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 1.2e-52 210.7 231 50.6
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 2.1e-52 209.9 236 50.8
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 2.7e-52 209.5 238 49.2
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 3.6e-52 209.1 234 49.1
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 1.0e-51 207.6 233 51.5
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.0e-51 207.6 231 51.5
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 1.4e-51 207.2 235 48.5
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 1.4e-51 207.2 232 49.1
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 6.7e-51 204.9 195 53.8
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 1.5e-50 203.8 231 47.6
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.0e-50 203.4 195 54.4
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 2.0e-50 203.4 233 50.6
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 4.4e-50 202.2 195 52.8
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 4.4e-50 202.2 233 48.9
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 7.4e-50 201.4 233 50.2
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 7.4e-50 201.4 233 48.5
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 9.7e-50 201.1 235 48.1
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 2.2e-49 199.9 234 48.3
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 2.2e-49 199.9 234 48.7
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 3.7e-49 199.1 236 47.0
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 3.7e-49 199.1 237 48.1
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 6.3e-49 198.4 235 48.9
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 8.2e-49 198.0 234 48.3
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 8.2e-49 198.0 236 46.2
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 8.2e-49 198.0 235 48.9
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 1.4e-48 197.2 231 48.1
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 3.1e-48 196.1 195 52.8
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.2e-47 194.1 192 51.0
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 1.6e-47 193.7 232 47.0
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 2.6e-47 193.0 234 46.6
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 2.6e-47 193.0 232 47.4
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 3.5e-47 192.6 232 46.1
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 3.5e-47 192.6 239 47.7
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 5.9e-47 191.8 234 46.2
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 5.9e-47 191.8 231 45.9
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 5.9e-47 191.8 203 49.3
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 5.9e-47 191.8 232 47.0
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 1.0e-46 191.0 235 45.1
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 1.3e-46 190.7 235 45.1
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 1.3e-46 190.7 235 45.1
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 2.2e-46 189.9 235 46.0
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 2.9e-46 189.5 233 44.6
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 2.9e-46 189.5 237 45.6
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 3.8e-46 189.1 234 45.7
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 1.9e-45 186.8 198 50.5
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 1.9e-45 186.8 235 46.4
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 1.9e-45 186.8 196 48.5
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 1.2e-44 184.1 235 44.7
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 2.1e-44 183.3 235 44.3
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 2.1e-44 183.3 235 44.3
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 2.7e-44 183.0 235 47.2
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 6.1e-44 181.8 234 44.4
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 3.0e-43 179.5 202 50.0
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 3.3e-42 176.0 241 43.6
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 4.4e-42 175.6 199 47.7
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 4.4e-42 175.6 204 47.5
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 9.7e-42 174.5 244 44.7
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 9.7e-42 174.5 231 48.1
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 3.7e-41 172.6 259 39.4
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 3.7e-41 172.6 259 39.4
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 2.4e-40 169.9 193 44.6
MD08G1168900 Malus domestica HOM05D003427 ORTHO05D003927 2.0e-39 166.8 193 49.7
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 3.6e-36 156.0 235 37.9
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 2.8e-33 146.4 257 35.8
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 4.8e-33 145.6 260 36.5
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 4.8e-33 145.6 264 36.0
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.7e-31 139.8 235 36.2
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.3e-30 137.5 233 36.1
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.3e-30 137.5 233 36.1
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 3.8e-30 136.0 240 35.4
BcaC02g07297 Brassica carinata HOM05D003427 ORTHO05D003927 3.2e-29 132.9 136 50.7
SEGI_10482 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.2e-29 132.9 200 37.5
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 2.1e-28 130.2 231 35.1
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 2.7e-28 129.8 209 39.2
Hma1.2p1_0009F.1_g006310 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 3.6e-28 129.4 93 60.2
HPP92_012126 Vanilla planifolia HOM05D003427 ORTHO05D003927 8.0e-28 128.3 151 41.7
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 1.8e-27 127.1 237 37.1
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 1.8e-27 127.1 197 41.1
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 3.0e-27 126.3 145 51.7
Glyma.04G252050 Glycine max HOM05D003427 ORTHO05D003927 8.3e-25 118.2 157 42.7
Atru.chr13.1350 Acer truncatum HOM05D003427 ORTHO05D003927 1.8e-24 117.1 79 69.6
MD15G1354300 Malus domestica HOM05D003427 ORTHO05D003927 1.6e-23 114.0 123 56.9
vmacro12551 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 2.7e-23 113.2 93 58.1
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 1.5e-21 107.5 201 31.3
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 1.2e-20 104.4 198 30.8
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 3.9e-14 82.8 229 32.8
Aqoxy1G02473 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 1.5e-13 80.9 228 31.1
AagrBONN_evm.TU.Sc2ySwM_344.5028 Anthoceros agrestis HOM05D003427 ORTHO05D003927 5.6e-13 79.0 192 31.2
unitig_748.g7679 Utricularia gibba HOM05D003427 ORTHO05D003927 5.6e-13 79.0 160 36.2
FAN27G1027 Fragaria x ananassa HOM05D003427 ORTHO05D003927 9.5e-13 78.2 81 55.6
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 2.8e-12 76.6 62 51.6
arahy.Tifrunner.gnm1.ann1.1IHI4J Arachis hypogaea HOM05D003427 ORTHO05D003927 1.5e-10 70.9 40 75.0
arahy.Tifrunner.gnm1.ann1.R476QE Arachis hypogaea HOM05D003427 ORTHO05D003927 1.5e-10 70.9 40 75.0
arahy.Tifrunner.gnm1.ann1.T4K93Z Arachis hypogaea HOM05D003427 ORTHO05D003927 1.5e-10 70.9 40 75.0
arahy.Tifrunner.gnm1.ann1.WPHY5E Arachis hypogaea HOM05D003427 ORTHO05D003927 1.5e-10 70.9 40 75.0
BcaB06g29200 Brassica carinata HOM05D003427 ORTHO05D003927 7.0e-08 62.0 101 37.6
Ah.05g172200 Amaranthus hybridus HOM05D003427 ORTHO05D003927 1.6e-07 60.8 110 39.1
Nitab4.5_0001273g0070 Nicotiana tabacum HOM05D003427 ORTHO05D003927 2.0e-07 60.5 163 29.4
vmacro12550 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 5.0e-06 55.8 107 34.6
Nitab4.5_0005357g0010 Nicotiana tabacum HOM05D003427 ORTHO05D003927 8.6e-06 55.1 99 38.4


User provided reference genes

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