Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1159100 Malus domestica HOM05D001245 ORTHO05D004475 1.5e-152 542.7 259 100.0
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 3.9e-108 395.2 232 79.7
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 8.6e-108 394.0 234 79.5
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.1e-107 393.7 234 82.5
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 6.2e-106 387.9 232 79.3
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.1e-105 387.1 232 79.3
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.8e-105 386.3 232 78.9
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.8e-105 386.3 232 78.4
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.1e-105 385.6 240 77.5
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 5.2e-105 384.8 229 78.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 3.4e-104 382.1 232 78.9
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 5.8e-104 381.3 227 77.5
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 1.7e-103 379.8 237 75.5
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 2.2e-103 379.4 227 77.1
Sopen01g030200 Solanum pennellii HOM05D001245 ORTHO05D004475 3.7e-103 378.6 235 75.7
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 4.9e-103 378.3 231 76.2
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 4.9e-103 378.3 231 76.2
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 8.3e-103 377.5 233 76.8
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 1.4e-102 376.7 230 75.7
Eucgr.F03843 Eucalyptus grandis HOM05D001245 ORTHO05D004475 3.2e-102 375.6 251 70.5
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 3.2e-102 375.6 231 77.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 1.0e-100 370.5 236 75.4
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 1.3e-100 370.2 233 75.1
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 1.7e-100 369.8 225 77.8
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.3e-100 369.4 231 73.6
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 2.3e-100 369.4 264 70.5
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 8.6e-100 367.5 232 75.4
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 8.6e-100 367.5 232 75.4
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.5e-99 366.7 232 75.4
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 2.5e-99 365.9 223 78.0
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 9.5e-99 364.0 231 74.9
CAN.G410.40 Capsicum annuum HOM05D001245 ORTHO05D004475 1.2e-98 363.6 231 73.6
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.6e-98 363.2 229 72.9
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.4e-97 360.1 235 73.2
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 4.0e-97 358.6 232 74.1
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 5.2e-97 358.2 225 74.7
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 8.9e-97 357.5 239 72.0
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 2.6e-96 355.9 232 72.8
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 5.8e-96 354.8 225 72.9
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 7.6e-96 354.4 232 72.0
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 1.7e-95 353.2 232 71.1
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 4.9e-95 351.7 231 69.7
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 6.4e-95 351.3 232 70.7
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.4e-94 350.1 232 71.6
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 1.9e-94 349.7 224 74.1
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 4.2e-94 348.6 246 69.5
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 4.2e-94 348.6 232 69.8
AT1G77320 Arabidopsis thaliana HOM05D001245 ORTHO05D004475 5.4e-94 348.2 232 71.1
CARHR070810 Cardamine hirsuta HOM05D001245 ORTHO05D004475 1.2e-93 347.1 232 69.8
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 2.1e-93 346.3 224 72.3
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.0e-92 344.0 232 70.7
Carub.0002s2420 Capsella rubella HOM05D001245 ORTHO05D004475 1.7e-92 343.2 234 68.4
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 2.3e-92 342.8 241 66.4
Ca_12648_v3 Cicer arietinum L. HOM05D001245 ORTHO05D005230 2.3e-92 342.8 230 70.4
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 8.7e-92 340.9 256 65.2
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 1.1e-91 340.5 233 69.1
SEGI_34477 Sequoiadendron giganteum HOM05D001245 ORTHO05D004475 5.6e-91 338.2 236 65.7
PSO170G6194 Papaver somniferum HOM05D001245 ORTHO05D004475 7.3e-91 337.8 233 67.4
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.2e-90 337.0 233 68.7
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 3.6e-90 335.5 221 71.5
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 3.6e-90 335.5 283 60.4
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 3.1e-89 332.4 221 71.0
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 3.1e-89 332.4 221 71.0
PSO528G0248 Papaver somniferum HOM05D001245 ORTHO05D004475 3.1e-89 332.4 233 67.0
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 9.0e-89 330.9 221 70.1
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 2.0e-88 329.7 232 67.2
SalBow6G4599 Salvia bowleyana HOM05D001245 ORTHO05D004475 2.0e-88 329.7 229 66.4
Lsat_1_v5_gn_1_9620 Lactuca sativa HOM05D001245 ORTHO05D004475 1.7e-87 326.6 201 75.1
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 2.9e-87 325.9 231 64.9
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 4.2e-86 322.0 196 76.0
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 5.4e-86 321.6 201 73.1
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 7.1e-86 321.2 209 72.7
RcHm_v2.0_Chr6g0296691 Rosa chinensis HOM05D001245 ORTHO05D004475 4.6e-85 318.5 206 74.3
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 5.1e-84 315.1 206 70.9
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 8.7e-84 314.3 253 61.3
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 2.6e-80 302.8 201 71.6
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 7.6e-80 301.2 201 71.1
HPP92_002227 Vanilla planifolia HOM05D001245 ORTHO05D004475 2.4e-78 296.2 201 69.7
CsaV3_4G028020 Cucumis sativus L. HOM05D001245 ORTHO05D004475 3.9e-76 288.9 182 74.2
Os11g0191300 Oryza sativa ssp. japonica HOM05D001245 ORTHO05D004475 3.9e-76 288.9 198 66.2
ATR0561G100 Amborella trichopoda HOM05D001245 ORTHO05D004475 1.1e-75 287.3 187 69.0
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 5.6e-75 285.0 211 65.4
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 2.8e-74 282.7 194 71.1
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 8.4e-71 271.2 233 56.2
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 1.9e-70 270.0 164 76.2
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 4.0e-65 252.3 209 60.3
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 3.4e-64 249.2 159 72.3
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.3e-63 247.3 176 70.5
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 2.9e-63 246.1 176 69.9
CsaV3_UNG115900 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.5e-63 245.0 213 58.2
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 2.5e-62 243.0 176 69.3
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 7.9e-61 238.0 234 53.8
unitig_21.g20280 Utricularia gibba HOM05D001245 ORTHO05D004475 3.3e-59 232.6 228 53.9
Ah.05g169150 Amaranthus hybridus HOM05D001245 ORTHO05D004475 2.8e-58 229.6 196 59.7
Mapoly0158s0032 Marchantia polymorpha HOM05D001245 ORTHO05D004475 2.8e-58 229.6 225 46.2
Pp3c3_700 Physcomitrium patens HOM05D001245 ORTHO05D004475 9.0e-57 224.6 225 47.1
SHI09206 Sapria himalayana HOM05D001245 ORTHO05D004475 1.4e-52 210.7 159 65.4
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 7.4e-51 204.9 207 52.7
CsaV3_UNG224630 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.2e-48 197.6 134 70.1
RcHm_v2.0_Chr7g0211681 Rosa chinensis HOM05D001245 ORTHO05D004475 3.9e-44 182.6 112 75.9
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.5e-43 180.6 167 56.3
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 8.2e-42 174.9 115 72.2
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 7.2e-38 161.8 122 66.4
Peaxi162Scf00087g00021 Petunia axillaris HOM05D001245 ORTHO05D004475 1.1e-35 154.5 153 51.6
CsaV3_UNG224670 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.8e-34 149.1 103 68.9
CsaV3_UNG111830 Cucumis sativus L. HOM05D001245 ORTHO05D004475 6.3e-34 148.7 100 71.0
SMO269G0035 Selaginella moellendorffii HOM05D001245 ORTHO05D004475 1.8e-33 147.1 255 34.1
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 1.2e-32 144.4 108 64.8
CsaV3_3G026510 Cucumis sativus L. HOM05D001245 ORTHO05D004475 4.5e-32 142.5 102 66.7
Pp3c19_810 Physcomitrium patens HOM05D001245 ORTHO05D004475 6.8e-28 128.6 167 40.1
SHI09208 Sapria himalayana HOM05D001245 ORTHO05D000023 6.3e-26 122.1 72 75.0
CBR_g37446 Chara braunii HOM05D001245 ORTHO05D004475 8.0e-21 105.1 119 43.7
CsaV3_3G026500 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.7e-18 97.4 58 72.4
CsaV3_UNG224660 Cucumis sativus L. HOM05D001245 ORTHO05D004475 1.7e-18 97.4 58 74.1
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 2.9e-15 86.7 117 41.0
Duzib041G0266 Durio zibethinus HOM05D001245 ORTHO05D005230 4.4e-11 72.8 48 64.6
CsaV3_5G018940 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.2e-10 70.5 52 67.3
AUR62013424 Chenopodium quinoa HOM05D001245 ORTHO05D004475 3.2e-09 66.6 99 41.4
Cre12.g515900 Chlamydomonas reinhardtii HOM05D001245 ORTHO05D004475 4.1e-09 66.2 140 28.6
HPP92_002159 Vanilla planifolia HOM05D001245 ORTHO05D004475 1.9e-06 57.4 43 65.1


User provided reference genes

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