Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1138500 Malus domestica HOM05D007522 ORTHO05D009518 2.0e-47 192.2 103 100.0
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 2.6e-39 165.2 103 84.5
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 6.4e-38 160.6 96 88.5
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 1.5e-34 149.4 95 82.1
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 2.5e-34 148.7 95 81.1
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 2.1e-33 145.6 96 80.2
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 2.8e-33 145.2 95 78.9
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 3.6e-33 144.8 96 79.2
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.1e-32 143.3 97 78.4
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.4e-32 142.9 97 77.3
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 1.4e-32 142.9 97 77.3
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 1.8e-32 142.5 95 80.0
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 8.9e-32 140.2 92 81.5
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 1.5e-31 139.4 97 76.3
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 9.9e-31 136.7 92 78.3
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 2.9e-30 135.2 92 79.3
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 3.7e-30 134.8 97 75.3
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 2.4e-29 132.1 96 75.0
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 5.4e-29 131.0 92 76.1
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 3.5e-28 128.3 82 81.7
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 4.6e-28 127.9 92 75.0
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 1.0e-27 126.7 96 70.8
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 1.7e-27 125.9 92 70.7
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 2.3e-27 125.6 92 73.9
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 2.3e-27 125.6 95 68.4
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 3.9e-27 124.8 100 68.0
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 5.1e-27 124.4 101 67.3
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 5.1e-27 124.4 84 81.0
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 1.5e-26 122.9 92 69.6
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 1.5e-26 122.9 92 69.6
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 1.5e-26 122.9 96 69.8
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 1.9e-26 122.5 92 67.4
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 1.9e-26 122.5 92 71.7
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 1.9e-26 122.5 82 78.0
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 1.9e-26 122.5 92 70.7
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 3.3e-26 121.7 95 68.4
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 3.3e-26 121.7 95 68.4
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 3.3e-26 121.7 100 67.0
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 3.3e-26 121.7 92 69.6
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 3.3e-26 121.7 88 68.2
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 5.6e-26 120.9 97 63.9
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 5.6e-26 120.9 95 66.3
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 7.3e-26 120.6 91 69.2
Cpa.g.sc91.26 Carica papaya HOM05D007522 ORTHO05D009518 7.3e-26 120.6 82 78.0
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 7.3e-26 120.6 90 68.9
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 1.2e-25 119.8 95 71.6
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 1.2e-25 119.8 101 65.3
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 1.4e-24 116.3 92 65.2
Migut.A00284 Erythranthe guttata HOM05D007522 ORTHO05D009518 2.4e-24 115.5 92 68.5
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 2.4e-24 115.5 92 65.2
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 6.8e-24 114.0 89 64.0
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 1.2e-23 113.2 92 65.2
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 1.2e-23 113.2 89 64.0
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 2.6e-23 112.1 92 65.2
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 4.4e-23 111.3 82 72.0
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 9.9e-23 110.2 82 72.0
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 9.9e-23 110.2 89 66.3
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 1.3e-22 109.8 82 70.7
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 2.9e-22 108.6 91 64.8
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 3.8e-22 108.2 95 63.2
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 4.9e-22 107.8 95 58.9
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 1.4e-21 106.3 97 56.7
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 1.9e-21 105.9 96 59.4
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 3.2e-21 105.1 83 66.3
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 5.4e-21 104.4 96 59.4
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 7.1e-21 104.0 84 66.7
Peaxi162Scf00267g00097 Petunia axillaris HOM05D007522 ORTHO05D009518 7.1e-21 104.0 92 65.2
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 1.7e-19 99.4 125 50.4
Aqoxy2G01954 Aquilegia oxysepala HOM05D007522 ORTHO05D009518 3.9e-19 98.2 73 74.0
AUR62032367 Chenopodium quinoa HOM05D007522 ORTHO05D009518 1.9e-18 95.9 82 64.6
FAN27G1610 Fragaria x ananassa HOM05D007522 ORTHO05D009518 2.8e-17 92.0 56 87.5
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 1.4e-16 89.7 63 79.4
Pp3c10_19840 Physcomitrium patens HOM05D007522 ORTHO05D009518 3.1e-16 88.6 91 53.8
EL10Ac2g02553 Beta vulgaris HOM05D007522 ORTHO05D009518 6.9e-16 87.4 82 58.5
AUR62024852 Chenopodium quinoa HOM05D007522 ORTHO05D009518 1.5e-15 86.3 96 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2977 Anthoceros agrestis HOM05D007522 ORTHO05D009518 1.3e-14 83.2 90 53.3
HPP92_008699 Vanilla planifolia HOM05D002348 ORTHO05D002512 3.8e-14 81.6 92 51.1
Mapoly0015s0053 Marchantia polymorpha HOM05D007522 ORTHO05D009518 6.4e-14 80.9 91 48.4
SEGI_07807 Sequoiadendron giganteum HOM05D007522 ORTHO05D009518 5.4e-13 77.8 72 59.7
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 2.1e-12 75.9 163 37.4
Glyma.04G070800 Glycine max HOM05D007522 ORTHO05D009518 2.3e-11 72.4 62 54.8
CDE02G2364 Ceratophyllum demersum HOM05D007522 ORTHO05D009518 6.6e-11 70.9 82 51.2
Psat0s1782g0120 Pisum sativum HOM05D007522 ORTHO05D009518 9.6e-10 67.0 41 80.5
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 4.8e-09 64.7 41 82.9
CBR_g51241 Chara braunii HOM05D007522 ORTHO05D009518 4.0e-08 61.6 92 38.0
SalBow8G3415 Salvia bowleyana HOM05D007522 ORTHO05D009518 5.3e-08 61.2 44 68.2
Haze_21613 Corylus avellana HOM05D007522 ORTHO05D009518 6.9e-08 60.8 41 78.0
Eucgr.C02843 Eucalyptus grandis HOM05D007522 ORTHO05D009518 9.0e-08 60.5 41 73.2
Eucgr.C02854 Eucalyptus grandis HOM05D007522 ORTHO05D009518 9.0e-08 60.5 41 73.2
CBR_g75925 Chara braunii HOM05D007522 ORTHO05D009518 7.6e-07 57.4 92 37.0
Eucgr.L02345 Eucalyptus grandis HOM05D007522 ORTHO05D009518 2.9e-06 55.5 41 68.3


User provided reference genes

Program Settings