Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 7.2e-204 714.9 843 100.0
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 6.3e-91 339.7 203 89.2
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.7e-83 315.1 316 83.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.8e-64 250.8 203 64.5
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.5e-63 248.8 203 65.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 5.5e-63 246.9 203 64.5
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 9.4e-63 246.1 203 69.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 9.4e-63 246.1 203 69.0
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.6e-62 244.2 203 68.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 8.0e-62 243.0 204 68.6
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.0e-62 243.0 204 68.6
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.8e-61 241.9 203 66.0
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 5.2e-61 240.4 204 67.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.2e-60 239.2 200 64.5
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.6e-60 238.0 203 62.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 3.4e-60 237.7 200 64.0
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.7e-59 235.3 201 64.2
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 3.7e-59 234.2 203 62.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 6.3e-59 233.4 203 64.0
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.4e-58 231.5 194 61.9
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 3.1e-58 231.1 203 62.1
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 7.0e-58 229.9 203 61.6
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.1e-58 229.6 207 61.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 2.7e-57 228.0 201 60.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.9e-57 226.9 203 61.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 7.7e-57 226.5 203 61.6
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-56 225.7 203 61.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-56 224.9 203 61.6
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.9e-55 221.9 203 61.6
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.3e-55 221.1 204 58.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.2e-54 219.2 204 61.3
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.0e-53 216.1 203 60.6
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.0e-53 216.1 206 57.8
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.0e-53 214.5 203 59.6
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 7.5e-52 209.9 209 55.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 9.8e-52 209.5 203 56.7
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.1e-50 206.1 199 57.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.2e-50 204.5 207 57.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 4.1e-50 204.1 185 61.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 5.4e-50 203.8 193 61.1
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 5.4e-50 203.8 214 57.9
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 5.4e-50 203.8 204 57.8
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.4e-50 203.8 169 63.3
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 7.0e-50 203.4 195 58.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.2e-50 203.0 193 61.1
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.2e-49 202.6 191 60.2
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.6e-49 202.2 203 57.6
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 2.7e-49 201.4 203 59.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 3.5e-49 201.1 202 55.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 5.9e-49 200.3 218 54.6
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 5.9e-49 200.3 218 54.6
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.0e-48 199.5 202 56.4
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.0e-48 199.5 195 60.0
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.0e-48 199.5 195 60.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.0e-48 199.5 195 60.0
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.3e-48 199.1 204 55.4
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.7e-48 198.7 176 69.9
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.7e-48 198.7 190 58.9
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.9e-48 198.0 190 57.9
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.9e-48 197.6 195 57.4
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.0e-48 197.2 204 55.9
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 5.0e-48 197.2 159 67.3
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 8.6e-48 196.4 198 58.1
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.3e-47 194.5 204 54.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.3e-47 194.5 204 55.4
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.3e-47 194.1 190 57.9
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.3e-47 193.4 193 58.5
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 7.3e-47 193.4 180 58.3
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-46 191.8 193 57.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-46 191.8 200 56.5
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.1e-46 191.8 205 55.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.6e-46 191.0 185 58.4
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 3.6e-46 191.0 190 57.4
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.1e-46 190.3 161 64.0
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 1.5e-44 185.7 186 56.5
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.4e-44 184.5 187 55.6
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.7e-43 182.2 182 56.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.7e-43 182.2 181 56.9
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.2e-43 181.8 181 56.4
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 2.2e-43 181.8 147 64.6
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 8.3e-43 179.9 149 66.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.4e-42 179.1 170 61.2
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.4e-42 179.1 205 53.7
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.4e-42 179.1 158 62.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.9e-42 178.7 183 55.2
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.2e-42 177.9 150 64.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-41 176.0 146 65.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-41 175.3 155 62.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.0e-41 175.3 164 55.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-41 174.9 155 61.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.7e-40 172.2 176 60.8
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 8.6e-40 169.9 186 52.7
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.5e-39 168.3 101 81.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.5e-39 168.3 158 57.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-38 165.6 101 78.2
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.6e-38 164.5 168 54.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.2e-38 163.7 103 79.6
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 6.2e-38 163.7 133 64.7
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 6.2e-38 163.7 101 77.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 6.2e-38 163.7 134 64.9
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 8.1e-38 163.3 179 53.6
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.1e-37 162.9 173 52.6
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.8e-37 162.2 100 77.0
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 4.0e-37 161.0 188 51.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 8.9e-37 159.8 101 75.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-36 159.5 102 77.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.5e-36 159.1 203 46.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 7.5e-36 156.8 198 49.5
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 9.8e-36 156.4 120 70.8
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.4e-34 152.5 120 65.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 4.1e-34 151.0 172 48.3
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.4e-34 150.6 90 82.2
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 7.1e-34 150.2 180 46.7
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.5e-33 147.9 184 48.4
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.5e-31 141.7 135 59.3
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 4.3e-31 141.0 208 45.7
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.1e-30 138.7 145 55.2
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.8e-30 138.3 92 76.1
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-29 136.0 88 73.9
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.5e-28 132.5 80 78.8
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.6e-28 131.7 159 52.2
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 5.8e-28 130.6 204 47.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.9e-27 128.3 81 80.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.4e-27 127.1 151 50.3
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.4e-27 127.1 151 50.3
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.1e-26 126.3 163 51.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.1e-26 124.4 121 54.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 5.4e-26 124.0 121 57.9
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 7.1e-26 123.6 126 56.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-25 121.3 144 52.8
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.0e-24 119.8 102 59.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-24 118.6 103 64.1
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.3e-23 114.8 100 59.0
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.6e-23 114.0 103 61.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.1e-22 112.1 105 58.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.1e-21 109.8 106 54.7
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-21 109.0 146 45.2
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 3.1e-21 108.2 104 56.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-21 107.8 137 51.1
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 8.9e-21 106.7 105 54.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.2e-20 106.3 106 54.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.6e-20 105.1 101 56.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 5.8e-20 104.0 107 54.2
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.3e-19 102.8 113 53.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.7e-19 102.4 100 55.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.2e-19 102.1 160 42.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.2e-19 102.1 104 53.8
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.9e-19 100.9 142 47.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.4e-18 99.4 100 54.0
MD15G1110900 Malus domestica HOM05D004041 ORTHO05D004564 4.6e-17 94.4 114 54.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.0e-16 93.2 107 49.5
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 6.6e-16 90.5 101 45.5
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 2.8e-14 85.1 52 73.1
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.8e-14 84.3 93 48.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.8e-13 82.4 101 48.5
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 9.0e-13 80.1 178 34.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 9.0e-13 80.1 66 65.2
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-12 79.0 48 79.2
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 3.4e-12 78.2 84 54.8
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.9e-11 74.3 139 39.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 5.4e-10 70.9 67 52.2
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.6e-09 69.3 175 30.9
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.5e-07 62.0 68 50.0


User provided reference genes

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