Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.0e-143 513.5 273 100.0
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.2e-104 383.6 270 72.2
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 9.1e-100 367.5 274 66.4
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 7.7e-99 364.4 260 68.8
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 1.8e-95 353.2 269 67.3
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.3e-95 352.8 251 70.1
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.3e-95 352.8 265 66.4
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.2e-94 350.5 265 65.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.6e-94 349.4 262 66.0
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 9.7e-94 347.4 272 65.4
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 9.7e-94 347.4 253 67.6
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.8e-93 345.9 251 68.1
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.8e-92 343.2 253 67.6
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.3e-92 341.7 277 65.0
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.3e-92 341.7 277 65.0
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 9.1e-92 340.9 251 67.7
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 9.1e-92 340.9 253 68.0
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 5.9e-91 338.2 258 66.3
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.0e-90 337.4 258 64.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 1.3e-90 337.0 272 64.3
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.7e-90 336.7 253 67.6
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.7e-90 336.7 277 62.1
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 5.0e-90 335.1 263 63.1
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 5.0e-90 335.1 297 60.9
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 6.5e-90 334.7 264 63.3
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 6.5e-90 334.7 264 63.3
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 8.5e-90 334.3 252 65.5
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.9e-89 333.2 261 65.1
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 7.2e-89 331.3 269 63.2
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 9.4e-89 330.9 261 64.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 2.1e-88 329.7 246 67.5
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 6.1e-88 328.2 268 62.3
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 1.0e-87 327.4 266 62.4
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.8e-87 326.6 277 61.0
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.8e-87 326.6 254 65.4
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.0e-87 325.9 285 59.3
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 6.8e-87 324.7 260 63.5
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.2e-86 323.9 258 65.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.0e-86 323.2 266 61.3
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 2.6e-86 322.8 260 65.8
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 2.6e-86 322.8 253 64.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 2.6e-86 322.8 253 64.4
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.6e-86 322.8 260 64.2
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 4.4e-86 322.0 260 62.3
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 5.7e-86 321.6 271 61.6
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 5.7e-86 321.6 278 61.9
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 5.7e-86 321.6 266 60.2
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 3.7e-85 318.9 262 60.7
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 3.1e-84 315.8 260 63.1
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.0e-84 314.7 234 67.9
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.2e-83 313.9 290 57.2
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.2e-83 313.9 271 59.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.2e-83 313.9 274 59.9
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.6e-83 313.5 253 59.3
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 4.5e-83 312.0 260 61.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 5.9e-83 311.6 271 59.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.3e-82 310.5 260 60.4
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 3.8e-82 308.9 272 61.8
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 5.0e-82 308.5 250 59.6
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 6.6e-82 308.1 253 62.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.1e-81 307.4 254 65.0
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 9.5e-81 304.3 255 60.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 9.5e-81 304.3 242 64.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.0e-79 300.8 263 59.7
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.3e-77 293.9 267 58.4
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.7e-77 293.5 254 61.8
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 2.2e-77 293.1 251 58.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 8.3e-77 291.2 267 62.9
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.4e-76 290.4 271 58.7
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.7e-75 286.2 249 57.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.7e-74 283.5 245 58.8
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.5e-73 280.4 260 59.2
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.1e-72 276.6 231 60.6
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.8e-72 276.2 258 54.3
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.7e-72 275.4 207 70.0
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 8.9e-71 271.2 255 57.3
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.4e-68 263.1 195 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 2.7e-67 259.6 259 49.8
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 2.7e-67 259.6 251 57.8
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 3.5e-67 259.2 247 58.3
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 7.8e-67 258.1 253 54.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.9e-65 253.4 276 52.9
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.9e-65 253.4 276 52.9
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 2.5e-65 253.1 207 60.9
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.3e-65 252.7 250 50.0
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 9.5e-65 251.1 206 61.7
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.8e-64 249.6 237 56.5
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 6.2e-64 248.4 190 63.2
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.4e-62 242.7 396 39.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.1e-59 233.4 251 51.0
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.7e-59 233.0 195 64.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 2.5e-57 226.5 208 52.9
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 2.8e-56 223.0 266 51.1
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 8.1e-56 221.5 150 69.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.0e-54 216.9 195 61.0
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.3e-50 204.1 157 63.1
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.1e-48 196.8 169 58.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.1e-47 193.0 256 46.5
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 5.2e-47 192.2 241 47.3
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.3e-45 187.6 157 59.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 6.4e-45 185.3 212 47.2
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.2e-43 181.0 134 69.4
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 6.0e-43 178.7 151 59.6
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 7.3e-41 171.8 125 68.0
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.6e-40 169.5 122 66.4
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 6.2e-40 168.7 145 57.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 4.0e-39 166.0 143 58.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 4.0e-39 166.0 113 69.0
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 7.6e-38 161.8 144 56.9
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.6e-38 161.8 144 56.9
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-36 157.9 144 56.2
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-36 157.9 144 56.2
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 5.6e-33 145.6 131 55.0
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 6.2e-32 142.1 95 71.6
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.4e-31 140.2 130 57.7
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 5.3e-31 139.0 143 51.7
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 6.9e-31 138.7 288 33.7
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 9.6e-25 118.2 288 28.8
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 2.8e-24 116.7 254 33.5
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.1e-23 114.8 71 71.8
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.0e-21 108.2 109 51.4
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 4.2e-20 102.8 56 78.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-20 102.4 166 38.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.6e-19 100.9 113 44.2
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 1.6e-19 100.9 61 72.1
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 2.1e-19 100.5 102 51.0
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.6e-19 99.4 103 48.5
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 3.9e-18 96.3 101 48.5
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.1e-17 94.7 76 56.6
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 3.3e-17 93.2 103 50.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.3e-10 70.5 64 50.0
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 2.8e-08 63.5 40 75.0
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.1e-07 59.7 33 78.8


User provided reference genes

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