Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 2.5e-273 944.9 490 100.0
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 7.4e-193 677.6 481 78.4
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 9.4e-156 554.3 514 63.2
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.3e-101 373.6 494 49.2
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.2e-94 351.3 489 48.1
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.2e-91 339.0 500 47.4
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.2e-89 334.7 500 47.0
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 7.6e-89 332.0 502 46.4
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 5.1e-77 292.7 502 41.8
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 7.4e-76 288.9 482 46.3
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.8e-75 287.0 491 43.2
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 5.9e-73 279.3 500 42.4
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.4e-63 248.1 443 42.0
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 8.8e-61 238.8 502 38.4
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 5.7e-60 236.1 593 35.1
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 6.3e-59 232.6 487 38.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.2e-59 232.3 492 36.8
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.8e-58 231.1 492 37.4
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.4e-58 230.7 494 36.8
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 5.3e-58 229.6 493 39.4
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 6.9e-58 229.2 494 38.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 1.0e-56 225.3 490 37.6
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 2.9e-56 223.8 489 36.8
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.9e-55 221.1 496 37.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 4.2e-55 219.9 493 36.5
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 7.2e-55 219.2 530 37.5
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 3.6e-54 216.9 495 34.5
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 4.7e-54 216.5 494 38.1
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.0e-53 213.8 360 43.9
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 3.9e-53 213.4 491 36.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.3e-52 210.3 489 35.0
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 4.4e-52 209.9 386 39.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.7e-52 208.8 484 35.7
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.7e-51 206.8 513 37.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 7.0e-50 202.6 480 36.2
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 2.9e-48 197.2 518 36.9
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 5.0e-48 196.4 493 37.3
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.1e-47 195.3 242 46.7
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.5e-47 194.1 492 34.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 3.2e-47 193.7 520 34.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 9.4e-47 192.2 484 34.3
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 2.1e-46 191.0 336 39.6
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.8e-45 188.0 501 35.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.0e-45 186.8 489 35.4
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.0e-45 186.8 489 35.4
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 6.7e-45 186.0 536 34.9
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.8e-43 180.6 588 32.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 1.1e-42 178.7 509 33.4
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 3.2e-39 167.2 511 34.1
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 7.2e-39 166.0 371 34.2
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 2.7e-38 164.1 557 32.5
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.0e-38 162.5 506 33.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.8e-37 161.4 496 33.3
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.8e-37 161.4 171 53.2
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.3e-37 161.0 299 36.8
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 6.8e-37 159.5 516 33.9
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 6.8e-37 159.5 217 44.2
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 4.8e-35 153.3 444 32.4
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.1e-34 152.1 484 31.8
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 4.1e-34 150.2 335 36.4
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 9.1e-34 149.1 493 31.6
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 3.5e-33 147.1 506 31.8
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 3.5e-33 147.1 269 37.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 1.5e-31 141.7 470 30.9
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 2.5e-31 141.0 470 30.6
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 3.2e-31 140.6 473 30.9
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 4.7e-30 136.7 181 44.8
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 4.0e-29 133.7 473 30.9
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 4.0e-29 133.7 219 42.0
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 8.8e-29 132.5 191 44.5
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.2e-28 132.1 179 44.1
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 2.0e-28 131.3 217 41.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 3.4e-28 130.6 188 44.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 3.4e-28 130.6 188 44.1
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 3.4e-28 130.6 317 33.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 5.7e-28 129.8 181 45.9
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 5.7e-28 129.8 275 34.9
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.3e-27 128.6 181 45.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.3e-27 128.6 304 33.2
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.2e-27 127.9 485 30.7
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.7e-27 127.1 431 32.7
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 4.9e-27 126.7 173 46.8
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 4.9e-27 126.7 487 32.2
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 6.3e-27 126.3 179 43.6
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-26 125.6 173 42.2
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 1.1e-26 125.6 173 42.2
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.1e-26 125.6 173 42.8
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.4e-26 125.2 176 43.8
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 2.4e-26 124.4 179 41.3
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 9.2e-26 122.5 205 39.0
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.2e-25 122.1 179 40.8
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.0e-25 121.3 494 28.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 2.7e-25 120.9 147 48.3
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.5e-25 120.6 501 30.5
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.5e-25 120.6 586 26.6
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 5.9e-25 119.8 173 47.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 5.9e-25 119.8 191 39.8
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.3e-24 118.6 299 33.4
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.3e-24 117.9 334 30.5
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 2.9e-24 117.5 362 33.4
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 5.0e-24 116.7 183 39.9
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 5.0e-24 116.7 191 39.3
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.0e-24 116.7 504 28.0
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 7.3e-23 112.8 473 30.2
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 5.7e-20 103.2 226 33.2
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 9.8e-20 102.4 249 36.1
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.9e-19 100.9 314 32.8
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 8.3e-19 99.4 206 39.8
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 5.4e-18 96.7 430 29.5
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 9.2e-18 95.9 133 42.9
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.6e-17 95.1 144 41.0
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.7e-17 94.4 96 49.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 6.6e-16 89.7 226 30.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 6.6e-16 89.7 181 35.9
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.2e-14 85.5 464 26.7
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 2.8e-14 84.3 104 47.1
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 4.0e-13 80.5 91 47.3
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.2e-13 80.1 496 26.4
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.6e-12 77.8 253 30.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.1e-10 72.4 116 37.1
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.0e-08 65.9 118 37.3
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.0e-08 64.3 134 34.3
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.1e-07 62.4 232 27.2
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 7.3e-07 59.7 530 23.8
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 9.5e-07 59.3 186 26.9
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 3.6e-06 57.4 112 31.2
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 4.7e-06 57.0 98 37.8
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 4.7e-06 57.0 102 35.3


User provided reference genes

Program Settings