Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1127500 Malus domestica HOM05D005872 ORTHO05D008133 7.2e-53 210.3 105 100.0
MD11G1080100 Malus domestica HOM05D005872 ORTHO05D008133 2.6e-31 138.7 75 89.3
FAN21G3245 Fragaria x ananassa HOM05D005872 ORTHO05D008133 2.9e-30 135.2 75 86.7
FAN16G1585 Fragaria x ananassa HOM05D005872 ORTHO05D008133 8.5e-30 133.7 75 85.3
FvH4_3g38221 Fragaria vesca HOM05D005872 ORTHO05D008133 1.5e-29 132.9 75 85.3
FAN11G1028 Fragaria x ananassa HOM05D005872 ORTHO05D008133 1.5e-29 132.9 75 85.3
RcHm_v2.0_Chr5g0068721 Rosa chinensis HOM05D005872 ORTHO05D008133 1.9e-29 132.5 75 84.0
MD03G1073800 Malus domestica HOM05D005872 ORTHO05D008133 1.0e-27 126.7 75 84.0
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 9.7e-26 120.2 75 80.0
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 5.3e-24 114.4 75 74.7
ClCG06G015810 Citrullus lanatus HOM05D005872 ORTHO05D008133 7.0e-24 114.0 75 74.7
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 1.2e-23 113.2 75 73.3
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 1.6e-23 112.8 75 73.3
CsaV3_6G016380 Cucumis sativus L. HOM05D005872 ORTHO05D008133 1.6e-23 112.8 75 73.3
Ca_25798_v3 Cicer arietinum L. HOM05D005872 ORTHO05D008133 2.7e-23 112.1 78 70.5
Dinv14463 Davidia involucrata HOM05D005872 ORTHO05D008133 4.5e-23 111.3 75 72.0
Glyma.07G114900 Glycine max HOM05D005872 ORTHO05D008133 5.9e-23 110.9 78 71.8
Glyma.03G110100 Glycine max HOM05D005872 ORTHO05D008133 7.7e-23 110.5 78 71.8
Lj3g0000632 Lotus japonicus HOM05D005872 ORTHO05D008133 7.7e-23 110.5 75 72.0
Psat4g224360 Pisum sativum HOM05D005872 ORTHO05D008133 1.0e-22 110.2 78 70.5
arahy.Tifrunner.gnm1.ann1.MB6FU1 Arachis hypogaea HOM05D005872 ORTHO05D008133 1.7e-22 109.4 78 70.5
arahy.Tifrunner.gnm1.ann1.PIAF8F Arachis hypogaea HOM05D005872 ORTHO05D008133 1.7e-22 109.4 78 70.5
VMungo0331G0535 Vigna mungo HOM05D005872 ORTHO05D008133 1.7e-22 109.4 78 69.2
Lalb_Chr12g0210551 Lupinus albus HOM05D005872 ORTHO05D008133 2.2e-22 109.0 75 72.0
TPR.G33123 Trifolium pratense HOM05D005872 ORTHO05D008133 2.2e-22 109.0 85 67.1
CSS0008565 Camellia sinensis var. sinensis HOM05D005872 ORTHO05D008133 2.9e-22 108.6 75 68.0
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 2.9e-22 108.6 75 69.3
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 2.9e-22 108.6 75 69.3
Nn2g13627 Nelumbo nucifera HOM05D005872 ORTHO05D008133 3.8e-22 108.2 75 69.3
CANSAT54G1024 Cannabis sativa HOM05D005872 ORTHO05D008133 5.0e-22 107.8 78 67.9
Hma1.2p1_1010F.1_g247380 Hydrangea macrophylla HOM05D005872 ORTHO05D008133 5.0e-22 107.8 75 68.0
TAR369G0221 Trochodendron aralioides HOM05D005872 ORTHO05D008133 5.0e-22 107.8 75 66.7
TAR369G0416 Trochodendron aralioides HOM05D005872 ORTHO05D008133 5.0e-22 107.8 75 66.7
Phvul.010G048100 Phaseolus vulgaris HOM05D005872 ORTHO05D008133 6.5e-22 107.5 78 66.7
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 8.5e-22 107.1 74 68.9
QL01p026804 Quercus lobata HOM05D005872 ORTHO05D008133 8.5e-22 107.1 76 69.7
Aqoxy4G02659 Aquilegia oxysepala HOM05D005872 ORTHO05D008133 1.1e-21 106.7 75 69.3
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 1.1e-21 106.7 78 65.4
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 1.1e-21 106.7 78 65.4
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 1.1e-21 106.7 78 65.4
Cc01_g13960 Coffea canephora HOM05D005872 ORTHO05D008133 2.5e-21 105.5 75 64.0
CDE06G2541 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 3.2e-21 105.1 75 65.3
CDE07G0691 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 3.2e-21 105.1 75 65.3
Medtr8g006995 Medicago truncatula HOM05D005872 ORTHO05D008133 3.2e-21 105.1 78 66.7
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 4.2e-21 104.8 75 68.0
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 5.5e-21 104.4 78 64.1
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 7.2e-21 104.0 75 65.3
MBI05_g03471_MAGBIO Magnolia biondii HOM05D005872 ORTHO05D008133 7.2e-21 104.0 76 64.5
Nitab4.5_0000918g0030 Nicotiana tabacum HOM05D005872 ORTHO05D008133 9.4e-21 103.6 75 62.7
Oeu045518.2 Olea europaea HOM05D005872 ORTHO05D008133 9.4e-21 103.6 75 66.7
PSO339G6296 Papaver somniferum HOM05D005872 ORTHO05D008133 9.4e-21 103.6 75 66.7
PSO384G4655 Papaver somniferum HOM05D005872 ORTHO05D008133 9.4e-21 103.6 75 66.7
Thecc.09G305200 Theobroma cacao HOM05D005872 ORTHO05D008133 1.2e-20 103.2 78 62.8
Nitab4.5_0000325g0040 Nicotiana tabacum HOM05D005872 ORTHO05D008133 1.6e-20 102.8 75 62.7
Ciclev10028981m.g Citrus clementina HOM05D005872 ORTHO05D008133 2.1e-20 102.4 87 60.9
SGA_v2.0_scaffold161G37856 Striga asiatica HOM05D005872 ORTHO05D008133 2.1e-20 102.4 75 64.0
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 2.7e-20 102.1 87 60.9
CAN.G375.78 Capsicum annuum HOM05D005872 ORTHO05D008133 2.7e-20 102.1 75 61.3
CAN.G375.79 Capsicum annuum HOM05D005872 ORTHO05D008133 2.7e-20 102.1 75 61.3
Solyc07g061900.3 Solanum lycopersicum HOM05D005872 ORTHO05D008133 2.7e-20 102.1 75 62.7
Sopen07g030180 Solanum pennellii HOM05D005872 ORTHO05D008133 2.7e-20 102.1 75 62.7
PGSC0003DMG400007051 Solanum tuberosum HOM05D005872 ORTHO05D008133 2.7e-20 102.1 75 62.7
SalBow2G3036 Salvia bowleyana HOM05D005872 ORTHO05D008133 3.6e-20 101.7 75 68.0
ECA248G3182 Erigeron canadensis HOM05D005872 ORTHO05D008133 4.7e-20 101.3 75 62.7
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 4.7e-20 101.3 84 61.9
AUR62001682 Chenopodium quinoa HOM05D005872 ORTHO05D008133 6.1e-20 100.9 82 58.5
Lsat_1_v5_gn_5_172301 Lactuca sativa HOM05D005872 ORTHO05D008133 6.1e-20 100.9 75 61.3
AUR62020100 Chenopodium quinoa HOM05D005872 ORTHO05D008133 1.0e-19 100.1 82 58.5
HanXRQChr01g0011361 Helianthus annuus HOM05D005872 ORTHO05D008133 1.0e-19 100.1 75 62.7
Sc06g0008430 Simmondsia chinensis HOM05D005872 ORTHO05D008133 1.0e-19 100.1 82 59.8
Actinidia34449 Actinidia chinensis HOM05D005872 ORTHO05D008133 1.4e-19 99.8 75 58.7
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 1.4e-19 99.8 80 62.5
Peaxi162Scf00003g04831 Petunia axillaris HOM05D005872 ORTHO05D008133 1.4e-19 99.8 75 62.7
Rhsim01G0235400 Rhododendron simsii HOM05D005872 ORTHO05D008133 1.4e-19 99.8 78 57.7
HPP92_014295 Vanilla planifolia HOM05D005872 ORTHO05D008133 1.4e-19 99.8 84 60.7
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 1.8e-19 99.4 84 60.7
MSTRG.17870 Avicennia marina HOM05D005872 ORTHO05D008133 2.3e-19 99.0 75 64.0
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 2.3e-19 99.0 81 61.7
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 2.3e-19 99.0 81 61.7
Manes.01G164100 Manihot esculenta HOM05D005872 ORTHO05D008133 2.3e-19 99.0 75 61.3
unitig_0.g444 Utricularia gibba HOM05D005872 ORTHO05D008133 4.0e-19 98.2 78 61.5
Eucgr.J01939 Eucalyptus grandis HOM05D005872 ORTHO05D008133 6.8e-19 97.4 79 58.2
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 6.8e-19 97.4 75 61.3
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 8.8e-19 97.1 80 60.0
Ah.08g220770 Amaranthus hybridus HOM05D005872 ORTHO05D008133 8.8e-19 97.1 82 53.7
vmacro14583 Vaccinium macrocarpon HOM05D005872 ORTHO05D008133 1.2e-18 96.7 79 58.2
EL10Ac7g16129 Beta vulgaris HOM05D005872 ORTHO05D008133 1.5e-18 96.3 82 57.3
ATR0618G074 Amborella trichopoda HOM05D005872 ORTHO05D008133 2.0e-18 95.9 78 57.7
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 2.0e-18 95.9 80 58.8
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 2.6e-18 95.5 78 61.5
TWI75G1308 Tripterygium wilfordii HOM05D005872 ORTHO05D008133 2.6e-18 95.5 75 60.0
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 3.4e-18 95.1 81 59.3
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 3.4e-18 95.1 81 59.3
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 4.4e-18 94.7 78 61.5
Zm00001eb011760 Zea mays HOM05D005872 ORTHO05D008133 5.7e-18 94.4 75 57.3
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 7.5e-18 94.0 81 59.3
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 9.8e-18 93.6 81 60.5
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 2.2e-17 92.4 81 58.0
Nn2g11395 Nelumbo nucifera HOM05D005872 ORTHO05D008133 3.7e-17 91.7 68 66.2
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 6.3e-17 90.9 81 56.8
Os03g0265400 Oryza sativa ssp. japonica HOM05D005872 ORTHO05D008133 6.3e-17 90.9 77 58.4
Hund18857 Selenicereus undatus HOM05D005872 ORTHO05D008133 8.3e-17 90.5 84 54.8
DCAR_018967 Daucus carota HOM05D000012 ORTHO05D174931 1.1e-16 90.1 75 57.3
Pp3c23_4120 Physcomitrium patens HOM05D005872 ORTHO05D008133 7.7e-15 84.0 69 58.0
Pp3c8_21780 Physcomitrium patens HOM05D005872 ORTHO05D008133 2.2e-14 82.4 69 56.5
SEGI_15715 Sequoiadendron giganteum HOM05D005872 ORTHO05D008133 5.0e-14 81.3 89 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3555 Anthoceros agrestis HOM05D005872 ORTHO05D008133 1.1e-13 80.1 89 42.7
Pp3c24_10220 Physcomitrium patens HOM05D005872 ORTHO05D008133 1.9e-13 79.3 69 53.6
SMO347G0310 Selaginella moellendorffii HOM05D005872 ORTHO05D008133 1.9e-13 79.3 85 45.9
CBR_g17149 Chara braunii HOM05D005872 ORTHO05D008133 1.2e-12 76.6 78 47.4
Mapoly0001s0232 Marchantia polymorpha HOM05D005872 ORTHO05D008133 3.6e-12 75.1 75 49.3
Migut.N00890 Erythranthe guttata HOM05D005872 ORTHO05D008133 8.0e-12 73.9 63 57.1
PRCOL_00005683 Prasinoderma coloniale HOM05D005872 ORTHO05D008133 4.4e-10 68.2 72 43.1
Sed0018549 Sechium edule HOM05D005872 ORTHO05D008133 4.9e-09 64.7 68 54.4
RcHm_v2.0_Chr3g0486041 Rosa chinensis HOM05D064208 ORTHO05D008133 2.4e-08 62.4 37 73.0
Cre11.g479500 Chlamydomonas reinhardtii HOM05D005872 ORTHO05D008133 3.5e-07 58.5 75 36.0
C01p40880 Brassica napus HOM05D005872 ORTHO05D017612 5.9e-07 57.8 64 51.6
BolC1t04043H Brassica oleracea HOM05D005872 ORTHO05D017612 5.9e-07 57.8 64 51.6
MCO16G079 Micromonas commoda HOM05D005872 ORTHO05D008133 2.3e-06 55.8 80 37.5
BcaC04g22283 Brassica carinata HOM05D005872 ORTHO05D017612 5.0e-06 54.7 63 50.8
A07p00900 Brassica napus HOM05D005872 ORTHO05D017612 5.0e-06 54.7 64 50.0


User provided reference genes

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