Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 3897.8 1988 100.0
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 3324.3 1908 88.3
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 3159.4 2003 81.8
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 3106.6 1996 79.8
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2658.6 2011 69.9
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2633.6 2018 69.5
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2630.9 2012 68.7
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2520.3 2010 66.1
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2494.2 1965 67.0
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2493.8 2016 65.8
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2475.3 2013 66.1
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2461.4 2012 65.5
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2455.2 2033 64.6
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2439.8 2009 65.3
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 2436.0 2015 65.5
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2424.0 2007 64.6
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2404.0 2084 61.5
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 2392.1 2016 63.6
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2372.8 2006 62.9
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 2372.0 2012 63.5
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2371.3 1947 64.9
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 2368.6 2007 62.9
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 2362.4 2009 62.9
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 2359.3 2001 62.9
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 2344.3 2001 62.4
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2339.3 1909 63.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2337.4 1918 64.9
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2335.8 1948 64.2
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 2333.1 1996 62.2
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2329.3 2081 59.7
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 2323.9 2010 62.3
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 2323.5 2003 61.4
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 2318.9 2005 62.5
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 2311.6 2000 61.6
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 2310.0 2001 61.5
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2301.6 1996 61.6
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 2288.5 2011 62.0
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 2281.1 2015 61.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2241.8 2141 58.2
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 2235.7 1863 65.3
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 2235.3 1929 62.3
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2205.6 1932 60.9
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 2188.3 1962 60.7
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 2160.6 2078 57.6
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 2159.8 1920 59.5
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2144.0 1925 59.6
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 2132.1 1991 57.5
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2131.7 2078 56.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 2123.6 2084 56.8
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 2115.1 1989 57.4
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 2107.8 2060 55.9
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 2107.0 2008 57.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 2103.2 1979 57.3
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 2079.3 1968 58.1
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 2077.8 1916 58.6
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2076.2 2017 55.7
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 2075.8 1909 58.0
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 2070.0 1968 57.4
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 2056.6 1919 57.9
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 2055.0 1914 58.2
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 2053.1 1345 78.3
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 2049.2 1927 57.9
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2048.1 2021 55.5
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 2048.1 2003 55.8
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 2042.3 1994 55.4
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 2038.8 1877 59.1
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 2038.1 1929 57.2
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 2036.5 1921 57.7
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 2035.8 1959 56.5
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2033.8 1915 57.7
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 2024.6 1911 57.0
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 2014.6 1945 57.1
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 2012.3 1915 57.2
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1996.9 1945 56.5
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1982.2 1919 55.4
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1977.6 2145 51.8
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1971.1 1930 56.0
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1971.1 1914 56.1
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 1953.7 1994 54.9
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1946.4 1975 54.5
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1932.1 1913 55.1
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1877.1 1923 55.6
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1838.5 2083 49.9
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1726.1 1607 58.7
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1659.4 1558 58.0
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1551.2 1793 49.1
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1474.5 1914 45.8
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1397.5 1156 64.1
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1242.6 2180 37.8
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1231.1 2205 37.3
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1181.4 1952 38.2
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 0.0e+00 1100.9 2101 35.3
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.6e-299 1033.9 794 68.6
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 4.3e-247 859.8 728 62.5
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 2.6e-244 850.5 1401 39.8
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.4e-242 844.7 800 59.4
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 1.5e-236 824.7 1142 43.2
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 9.2e-234 815.5 781 57.7
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 6.0e-233 812.8 2092 30.4
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 6.0e-217 759.6 739 57.6
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 4.8e-198 696.8 723 55.0
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 9.0e-197 692.6 805 51.8
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 4.0e-128 464.5 429 55.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 5.8e-119 434.1 358 61.2
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.1e-93 350.1 494 44.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 4.5e-87 328.2 198 81.8
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 1.9e-74 286.2 220 65.5
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 7.4e-66 257.7 217 59.9
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.8e-64 253.1 271 49.8
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 7.9e-60 237.7 268 48.5
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 1.3e-54 220.3 293 49.5
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 3.9e-51 208.8 124 82.3
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 6.7e-43 181.4 268 43.3
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 5.9e-39 168.3 199 46.2
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 3.1e-32 146.0 121 59.5
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.5e-29 136.3 148 48.0
MD08G1109200 Malus domestica HOM05D006132 ORTHO05D007305 3.4e-26 125.9 71 85.9
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 6.3e-25 121.7 99 67.7
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 1.5e-21 110.5 106 52.8
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 3.0e-19 102.8 118 56.8
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 4.4e-18 99.0 68 69.1
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 4.6e-15 89.0 61 70.5
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 1.9e-13 83.6 66 56.1
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.6e-12 80.5 54 77.8
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 3.6e-12 79.3 117 41.9
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.0e-11 77.8 212 28.3
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 2.0e-10 73.6 90 43.3
Psat3g171600 Pisum sativum HOM05D006132 ORTHO05D007305 3.2e-08 66.2 127 36.2
SMO351G0355 Selaginella moellendorffii HOM05D023170 ORTHO05D007305 4.1e-08 65.9 71 54.9
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.6e-07 63.9 78 47.4


User provided reference genes

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