Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1107000 Malus domestica HOM05D003475 ORTHO05D004155 3.0e-93 345.1 170 100.0
GSVIVG01009564001 Vitis vinifera HOM05D003475 ORTHO05D004155 7.0e-82 307.4 168 88.7
MD08G1107200 Malus domestica HOM05D003475 ORTHO05D004155 2.0e-81 305.8 168 89.3
Cc10_g03890 Coffea canephora HOM05D003475 ORTHO05D004155 1.3e-80 303.1 168 87.5
Prupe.1G441500 Prunus persica HOM05D003475 ORTHO05D004155 1.7e-80 302.8 168 89.3
QL02p006064 Quercus lobata HOM05D003475 ORTHO05D004155 2.2e-80 302.4 167 86.8
CANSAT25G2609 Cannabis sativa HOM05D003475 ORTHO05D004155 3.8e-80 301.6 168 88.1
Cfa018505 Carpinus fangiana HOM05D003475 ORTHO05D004155 3.8e-80 301.6 168 86.9
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 3.8e-80 301.6 168 87.5
Haze_17571 Corylus avellana HOM05D003475 ORTHO05D004155 3.8e-80 301.6 168 86.9
RcHm_v2.0_Chr6g0307051 Rosa chinensis HOM05D003475 ORTHO05D004155 8.5e-80 300.4 168 88.1
Hma1.2p1_0260F.1_g104710 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 1.5e-79 299.7 167 87.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 2.5e-79 298.9 168 87.5
MD15G1087800 Malus domestica HOM05D003475 ORTHO05D004155 2.5e-79 298.9 168 88.1
FAN20G0705 Fragaria x ananassa HOM05D003475 ORTHO05D004155 5.5e-79 297.7 168 87.5
TAR381G1600 Trochodendron aralioides HOM05D003475 ORTHO05D004155 5.5e-79 297.7 168 86.9
Eucgr.F00026 Eucalyptus grandis HOM05D003475 ORTHO05D004155 1.6e-78 296.2 168 86.3
FAN27G1383 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.6e-78 296.2 168 86.9
Thecc.08G013900 Theobroma cacao HOM05D003475 ORTHO05D004155 3.6e-78 295.0 168 86.9
MELO3C016731.2 Cucumis melo HOM05D003475 ORTHO05D004155 8.0e-78 293.9 168 85.1
FvH4_2g34941 Fragaria vesca HOM05D003475 ORTHO05D004155 1.0e-77 293.5 167 86.8
PGR083G1228 Punica granatum HOM05D003475 ORTHO05D004155 1.4e-77 293.1 168 85.1
CsaV3_4G034080 Cucumis sativus L. HOM05D003475 ORTHO05D004155 1.8e-77 292.7 168 85.1
Sc02g0006850 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.8e-77 292.7 168 83.9
Ciclev10003676m.g Citrus clementina HOM05D003475 ORTHO05D004155 2.3e-77 292.4 168 85.7
COL.COLO4_26452 Corchorus olitorius HOM05D003475 ORTHO05D004155 2.3e-77 292.4 168 85.7
FAN20G3001 Fragaria x ananassa HOM05D003475 ORTHO05D004155 4.0e-77 291.6 167 85.6
Sed0005929 Sechium edule HOM05D003475 ORTHO05D004155 4.0e-77 291.6 168 83.9
Atru.chr13.624 Acer truncatum HOM05D003475 ORTHO05D004155 5.2e-77 291.2 168 84.5
Duzib116G0360 Durio zibethinus HOM05D003475 ORTHO05D004155 5.2e-77 291.2 167 84.4
vmacro21559 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 5.2e-77 291.2 168 83.9
Potri.002G128700 Populus trichocarpa HOM05D003475 ORTHO05D004155 6.7e-77 290.8 168 84.5
FAN15G0079 Fragaria x ananassa HOM05D003475 ORTHO05D004155 8.8e-77 290.4 168 86.3
Manes.18G034500 Manihot esculenta HOM05D003475 ORTHO05D004155 8.8e-77 290.4 168 83.3
Actinidia15262 Actinidia chinensis HOM05D003475 ORTHO05D004155 1.1e-76 290.0 168 83.3
MBI02_g21206_MAGBIO Magnolia biondii HOM05D003475 ORTHO05D004155 1.5e-76 289.7 168 82.7
TWI56G0590 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 2.0e-76 289.3 168 83.3
SGA_v2.0_scaffold217G42435 Striga asiatica HOM05D003475 ORTHO05D004155 2.6e-76 288.9 168 82.7
Os06g0215300 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 4.4e-76 288.1 168 83.3
MSTRG.25109 Avicennia marina HOM05D003475 ORTHO05D004155 7.5e-76 287.3 168 84.5
Eucgr.F00027 Eucalyptus grandis HOM05D003475 ORTHO05D004155 7.5e-76 287.3 168 83.9
Eucgr.L02208 Eucalyptus grandis HOM05D003475 ORTHO05D004155 7.5e-76 287.3 168 83.9
DCAR_008786 Daucus carota HOM05D003475 ORTHO05D004155 9.7e-76 287.0 168 82.7
Eucgr.F00028 Eucalyptus grandis HOM05D003475 ORTHO05D004155 9.7e-76 287.0 168 83.3
Zm00001eb373080 Zea mays HOM05D003475 ORTHO05D004155 9.7e-76 287.0 168 81.5
AUR62022463 Chenopodium quinoa HOM05D003475 ORTHO05D004155 1.7e-75 286.2 168 82.7
Oeu032239.1 Olea europaea HOM05D003475 ORTHO05D004155 1.7e-75 286.2 168 83.3
arahy.Tifrunner.gnm1.ann1.W6GX7N Arachis hypogaea HOM05D003475 ORTHO05D004155 2.2e-75 285.8 167 82.0
CSS0007643 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 2.2e-75 285.8 168 81.0
PSO675G3306 Papaver somniferum HOM05D003475 ORTHO05D004155 2.2e-75 285.8 168 82.7
TPR.G16593 Trifolium pratense HOM05D003475 ORTHO05D004155 2.2e-75 285.8 167 80.8
Ca_05516_v3 Cicer arietinum L. HOM05D003475 ORTHO05D004155 2.8e-75 285.4 168 82.1
Gohir.D06G014300 Gossypium hirsutum HOM05D003475 ORTHO05D004155 2.8e-75 285.4 168 81.5
Gorai.010G016900 Gossypium raimondii HOM05D003475 ORTHO05D004155 2.8e-75 285.4 168 81.5
AUR62040061 Chenopodium quinoa HOM05D003475 ORTHO05D004155 3.7e-75 285.0 168 82.1
FAN15G1851 Fragaria x ananassa HOM05D003475 ORTHO05D004155 3.7e-75 285.0 167 83.2
SalBow7G2172 Salvia bowleyana HOM05D003475 ORTHO05D004155 3.7e-75 285.0 168 82.7
Sopen04g019770 Solanum pennellii HOM05D003475 ORTHO05D004155 3.7e-75 285.0 168 82.1
ECA248G1217 Erigeron canadensis HOM05D003475 ORTHO05D004155 4.8e-75 284.6 168 82.7
Phvul.006G042600 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 4.8e-75 284.6 168 83.3
Glyma.08G315400 Glycine max HOM05D003475 ORTHO05D004155 6.3e-75 284.3 168 82.7
Gohir.A06G016100 Gossypium hirsutum HOM05D003475 ORTHO05D004155 6.3e-75 284.3 168 81.0
Solyc04g049630.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 6.3e-75 284.3 168 82.1
VMungo0540G2323 Vigna mungo HOM05D003475 ORTHO05D004155 1.1e-74 283.5 168 82.1
Glyma.18G098400 Glycine max HOM05D003475 ORTHO05D004155 1.4e-74 283.1 167 80.8
Medtr3g051310 Medicago truncatula HOM05D003475 ORTHO05D004155 2.4e-74 282.3 168 79.8
PSO541G5638 Papaver somniferum HOM05D003475 ORTHO05D004155 3.1e-74 282.0 168 82.1
GSVIVG01009565001 Vitis vinifera HOM05D003475 ORTHO05D004155 3.1e-74 282.0 168 82.1
Migut.C00608 Erythranthe guttata HOM05D003475 ORTHO05D004155 4.1e-74 281.6 168 81.5
EL10Ac1g01808 Beta vulgaris HOM05D003475 ORTHO05D004155 1.2e-73 280.0 168 79.8
TWI56G1470 Tripterygium wilfordii HOM05D003475 ORTHO05D004155 1.2e-73 280.0 168 80.4
Lalb_Chr18g0049301 Lupinus albus HOM05D003475 ORTHO05D004155 2.0e-73 279.3 167 81.4
CAN.G57.16 Capsicum annuum HOM05D003475 ORTHO05D004155 5.9e-73 277.7 179 77.1
Lj6g0027326 Lotus japonicus HOM05D003475 ORTHO05D004155 7.7e-73 277.3 168 79.8
AL7G45140 Arabidopsis lyrata HOM05D003475 ORTHO05D004155 1.3e-72 276.6 167 80.8
Ah.11g043410 Amaranthus hybridus HOM05D003475 ORTHO05D004155 2.2e-72 275.8 168 79.2
VMungo0540G0248 Vigna mungo HOM05D003475 ORTHO05D004155 2.2e-72 275.8 167 79.0
SHI08311 Sapria himalayana HOM05D003475 ORTHO05D004155 2.9e-72 275.4 168 79.8
AT5G36210 Arabidopsis thaliana HOM05D003475 ORTHO05D004155 5.0e-72 274.6 167 79.6
CSS0021204 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 5.0e-72 274.6 168 80.4
ClCG05G019590 Citrullus lanatus HOM05D003475 ORTHO05D004155 5.0e-72 274.6 156 85.9
Cc10_g03900 Coffea canephora HOM05D003475 ORTHO05D004155 5.0e-72 274.6 168 79.8
CARHR216560 Cardamine hirsuta HOM05D003475 ORTHO05D004155 6.5e-72 274.2 167 79.0
HPP92_004258 Vanilla planifolia HOM05D003475 ORTHO05D004155 6.5e-72 274.2 168 79.2
A08p00170 Brassica napus HOM05D003475 ORTHO05D004155 1.5e-71 273.1 167 79.0
BraA08t32073Z Brassica rapa HOM05D003475 ORTHO05D004155 1.5e-71 273.1 167 79.0
CSS0002070 Camellia sinensis var. sinensis HOM05D003475 ORTHO05D004155 1.5e-71 273.1 168 79.8
FvH4_2g34950 Fragaria vesca HOM05D003475 ORTHO05D004155 1.9e-71 272.7 168 81.5
Aa31LG9G17910 Aethionema arabicum HOM05D003475 ORTHO05D004155 4.2e-71 271.6 168 79.2
CDE06G0513 Ceratophyllum demersum HOM05D003475 ORTHO05D004155 4.2e-71 271.6 168 76.8
Carub.0007s3188 Capsella rubella HOM05D003475 ORTHO05D004155 7.2e-71 270.8 167 79.0
PSO675G3178 Papaver somniferum HOM05D003475 ORTHO05D004155 7.2e-71 270.8 168 78.6
ATR0097G003 Amborella trichopoda HOM05D003475 ORTHO05D004155 9.4e-71 270.4 168 76.8
C03p93340 Brassica napus HOM05D003475 ORTHO05D004155 1.6e-70 269.6 167 78.4
BolC3t21632H Brassica oleracea HOM05D003475 ORTHO05D004155 1.6e-70 269.6 167 78.4
Sp7g05960 Schrenkiella parvula HOM05D003475 ORTHO05D004155 1.6e-70 269.6 167 77.8
Eucgr.F00025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 2.7e-70 268.9 168 80.4
Os06g0215400 Oryza sativa ssp. japonica HOM05D003475 ORTHO05D004155 2.7e-70 268.9 167 77.2
Thhalv10003712m.g Eutrema salsugineum HOM05D003475 ORTHO05D004155 3.6e-70 268.5 167 77.8
Psat5g180320 Pisum sativum HOM05D003475 ORTHO05D004155 3.6e-70 268.5 168 79.2
Aqoxy6G01420 Aquilegia oxysepala HOM05D003475 ORTHO05D004155 4.7e-70 268.1 168 78.6
MELO3C016729.2 Cucumis melo HOM05D003475 ORTHO05D004155 4.7e-70 268.1 156 82.7
Prupe.1G441400 Prunus persica HOM05D003475 ORTHO05D004155 4.7e-70 268.1 168 79.8
Phvul.006G042700 Phaseolus vulgaris HOM05D003475 ORTHO05D004155 6.1e-70 267.7 167 76.6
Sed0014453 Sechium edule HOM05D003475 ORTHO05D004155 1.0e-69 266.9 156 83.3
Hma1.2p1_1543F.1_g289760 Hydrangea macrophylla HOM05D003475 ORTHO05D004155 1.8e-69 266.2 167 79.6
THA.LOC104821889 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 1.8e-69 266.2 168 76.2
CsaV3_4G034070 Cucumis sativus L. HOM05D003475 ORTHO05D004155 2.0e-68 262.7 156 80.8
Eucgr.L03025 Eucalyptus grandis HOM05D003475 ORTHO05D004155 4.4e-68 261.5 168 79.8
THA.LOC104823807 Tarenaya hassleriana HOM05D003475 ORTHO05D004155 4.4e-68 261.5 167 74.3
Actinidia27942 Actinidia chinensis HOM05D003475 ORTHO05D004155 5.7e-68 261.2 168 78.6
arahy.Tifrunner.gnm1.ann1.VT20D2 Arachis hypogaea HOM05D003475 ORTHO05D004155 1.3e-67 260.0 152 82.9
Rhsim06G0046300 Rhododendron simsii HOM05D003475 ORTHO05D004155 2.8e-67 258.8 194 69.1
Solyc10g050840.3 Solanum lycopersicum HOM05D003475 ORTHO05D004155 6.3e-67 257.7 168 76.2
Sopen10g022400 Solanum pennellii HOM05D003475 ORTHO05D004155 6.3e-67 257.7 168 76.2
CAN.G1288.14 Capsicum annuum HOM05D003475 ORTHO05D004155 8.3e-67 257.3 167 76.0
HanXRQChr13g0399111 Helianthus annuus HOM05D003475 ORTHO05D004155 1.4e-66 256.5 168 74.4
Nitab4.5_0002673g0070 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.8e-66 256.1 168 76.2
Lsat_1_v5_gn_6_33061 Lactuca sativa HOM05D003475 ORTHO05D004155 2.4e-66 255.8 154 81.2
Lsat_1_v5_gn_1_54780 Lactuca sativa HOM05D003475 ORTHO05D004155 4.1e-66 255.0 155 80.6
Nitab4.5_0000876g0160 Nicotiana tabacum HOM05D003475 ORTHO05D004155 1.6e-65 253.1 168 75.0
PSO675G9051 Papaver somniferum HOM05D003475 ORTHO05D004155 4.5e-65 251.5 169 75.1
Peaxi162Scf00929g00519 Petunia axillaris HOM05D003475 ORTHO05D004155 7.7e-65 250.8 168 74.4
vmacro19485 Vaccinium macrocarpon HOM05D003475 ORTHO05D004155 7.7e-65 250.8 201 65.2
PGSC0003DMG400008244 Solanum tuberosum HOM05D003475 ORTHO05D004155 1.0e-64 250.4 168 75.0
Peaxi162Scf00003g01723 Petunia axillaris HOM05D003475 ORTHO05D004155 5.5e-63 244.6 186 69.4
Nitab4.5_0003649g0040 Nicotiana tabacum HOM05D003475 ORTHO05D004155 7.2e-63 244.2 165 74.5
DCAR_003620 Daucus carota HOM05D003475 ORTHO05D004155 1.2e-62 243.4 168 73.8
SMO361G0429 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 6.1e-62 241.1 166 68.1
Nitab4.5_0003438g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 4.0e-61 238.4 189 67.2
Nitab4.5_0004930g0010 Nicotiana tabacum HOM05D003475 ORTHO05D004155 4.0e-61 238.4 189 67.2
Hund26615 Selenicereus undatus HOM05D003475 ORTHO05D004155 1.7e-59 233.0 167 70.7
Pp3c1_10400 Physcomitrium patens HOM05D003475 ORTHO05D004155 2.8e-59 232.3 168 66.1
HPP92_004236 Vanilla planifolia HOM05D003475 ORTHO05D004155 6.3e-59 231.1 168 71.4
ECA233G1971 Erigeron canadensis HOM05D003475 ORTHO05D004155 1.1e-58 230.3 168 69.0
Lj9A359T75 Lonicera japonica HOM05D003475 ORTHO05D004155 3.1e-58 228.8 194 64.4
Mapoly0002s0297 Marchantia polymorpha HOM05D003475 ORTHO05D004155 5.4e-58 228.0 169 66.3
Sabra02G0100800 Salix brachista HOM05D003475 ORTHO05D004155 9.5e-55 217.2 151 72.8
arahy.Tifrunner.gnm1.ann1.DEGU9R Arachis hypogaea HOM05D003475 ORTHO05D004155 5.2e-53 211.5 130 82.3
arahy.Tifrunner.gnm1.ann1.HRI1KU Arachis hypogaea HOM05D003475 ORTHO05D004155 6.8e-53 211.1 128 80.5
CBR_g23970 Chara braunii HOM05D003475 ORTHO05D004155 9.2e-50 200.7 170 61.8
FAN27G2115 Fragaria x ananassa HOM05D003475 ORTHO05D004155 1.7e-48 196.4 129 79.1
Lj4C50T5 Lonicera japonica HOM05D003475 ORTHO05D004155 5.0e-40 168.3 95 85.3
PRCOL_00005577 Prasinoderma coloniale HOM05D003475 ORTHO05D004155 8.1e-38 161.0 154 53.9
Cre10.g423300 Chlamydomonas reinhardtii HOM05D003475 ORTHO05D004155 5.2e-37 158.3 170 48.8
HanXRQChr11g0349621 Helianthus annuus HOM05D003475 ORTHO05D004155 8.9e-37 157.5 95 77.9
Cpa.g.c26337.1 Carica papaya HOM05D003475 ORTHO05D004155 2.6e-36 156.0 95 78.9
HanXRQChr11g0349761 Helianthus annuus HOM05D003475 ORTHO05D004155 9.5e-31 137.5 74 89.2
Sc08g0000060 Simmondsia chinensis HOM05D003475 ORTHO05D004155 4.7e-30 135.2 89 75.3
Lj4A50T39 Lonicera japonica HOM05D003475 ORTHO05D004155 3.8e-27 125.6 74 82.4
SEGI_38131 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 6.4e-27 124.8 72 81.9
SEGI_23875 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 4.1e-26 122.1 72 81.9
HanXRQChr11g0349531 Helianthus annuus HOM05D003475 ORTHO05D004155 2.7e-25 119.4 72 81.9
HanXRQChr12g0382841 Helianthus annuus HOM05D003475 ORTHO05D000562 1.6e-22 110.2 66 83.3
ATR0097G016 Amborella trichopoda HOM05D003475 ORTHO05D004155 5.2e-21 105.1 84 61.9
SEGI_00299 Sequoiadendron giganteum HOM05D003475 ORTHO05D004155 2.6e-20 102.8 96 53.1
Zm00001eb373040 Zea mays HOM05D003475 ORTHO05D004155 6.4e-19 98.2 64 71.9
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.0e-16 90.9 98 50.0
GSVIVG01038759001 Vitis vinifera HOM05D003475 ORTHO05D004155 3.0e-16 89.4 72 62.5
SMO361G0168 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 9.0e-13 77.8 68 58.8
SMO226G0004 Selaginella moellendorffii HOM05D003475 ORTHO05D004155 1.5e-12 77.0 71 56.3
Dinv42129 Davidia involucrata HOM05D003475 ORTHO05D004155 2.4e-10 69.7 58 63.8
arahy.Tifrunner.gnm1.ann1.HN34MD Arachis hypogaea HOM05D003475 ORTHO05D004155 9.3e-10 67.8 40 85.0
Sc08g0000070 Simmondsia chinensis HOM05D003475 ORTHO05D004155 1.8e-08 63.5 40 75.0
Mapoly0175s0001 Marchantia polymorpha HOM05D003475 ORTHO05D026663 4.3e-07 58.9 144 27.8
MD15G1087700 Malus domestica HOM05D003475 ORTHO05D004155 5.6e-07 58.5 34 79.4
Pp3c20_7850 Physcomitrium patens HOM05D003475 ORTHO05D026663 7.4e-07 58.2 141 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3095 Anthoceros agrestis HOM05D003475 ORTHO05D026663 9.6e-07 57.8 141 29.1


User provided reference genes

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