Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 6.4e-174 614.0 312 100.0
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.1e-146 523.5 295 90.2
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 3.5e-140 501.9 305 85.6
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.9e-125 453.0 297 80.1
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.3e-118 430.3 298 74.2
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.3e-118 430.3 298 74.2
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.2e-118 429.5 306 74.5
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 2.7e-116 422.5 283 78.1
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.8e-115 419.9 287 72.8
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.1e-114 417.2 272 77.9
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 1.5e-114 416.8 287 74.9
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 2.0e-114 416.4 295 72.9
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 5.7e-114 414.8 297 72.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 2.2e-113 412.9 294 72.1
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 3.7e-113 412.1 297 71.7
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 6.3e-113 411.4 264 79.2
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 1.3e-110 403.7 298 71.8
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 1.3e-110 403.7 304 69.4
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 8.5e-110 401.0 294 72.1
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 3.2e-109 399.1 300 70.7
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 4.2e-109 398.7 300 71.0
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.5e-109 398.3 247 82.2
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 9.4e-109 397.5 294 71.1
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 3.6e-108 395.6 305 68.5
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.0e-107 394.0 264 77.7
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.4e-107 393.7 303 66.0
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 3.0e-107 392.5 303 67.7
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 3.0e-107 392.5 304 68.4
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 3.9e-107 392.1 290 72.4
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 5.2e-107 391.7 294 69.4
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 6.7e-107 391.3 391 58.1
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 6.7e-107 391.3 324 64.8
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 4.4e-106 388.7 303 67.7
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 5.7e-106 388.3 295 70.2
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 1.7e-105 386.7 293 71.0
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 1.4e-104 383.6 292 67.1
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 1.4e-104 383.6 297 68.7
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 1.8e-104 383.3 268 72.0
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 2.4e-104 382.9 300 67.0
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 3.1e-104 382.5 269 72.1
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 4.1e-104 382.1 302 68.2
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 5.3e-104 381.7 302 66.9
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 7.0e-104 381.3 300 65.0
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.5e-103 378.6 289 69.9
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 4.5e-103 378.6 261 73.9
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 5.9e-103 378.3 286 68.9
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 7.7e-103 377.9 293 68.6
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 1.0e-102 377.5 298 66.1
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 1.7e-102 376.7 298 68.1
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 2.2e-102 376.3 301 66.1
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 6.5e-102 374.8 293 66.9
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.1e-101 374.0 258 71.3
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 1.9e-101 373.2 227 80.2
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 2.5e-101 372.9 293 67.9
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 3.2e-101 372.5 255 71.8
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.6e-100 370.2 250 74.0
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.4e-99 367.1 275 70.5
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.4e-99 367.1 283 68.9
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 6.7e-99 364.8 307 65.8
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 8.8e-99 364.4 304 64.1
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.6e-98 362.8 294 66.3
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 3.3e-98 362.5 273 67.0
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 4.4e-98 362.1 251 69.7
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 9.7e-98 360.9 246 74.0
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.8e-97 359.4 295 62.4
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 8.2e-97 357.8 297 62.6
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.1e-96 357.5 342 56.7
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 1.8e-96 356.7 293 63.5
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 3.1e-96 355.9 254 70.5
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 7.0e-96 354.8 290 63.4
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 9.1e-96 354.4 289 66.1
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.7e-95 352.8 305 61.3
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 3.5e-95 352.4 228 77.2
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 3.5e-95 352.4 252 71.8
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 3.5e-95 352.4 263 68.8
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 1.0e-94 350.9 291 62.9
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 2.2e-94 349.7 290 65.2
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 2.9e-94 349.4 289 62.6
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 5.0e-94 348.6 259 67.2
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 8.5e-94 347.8 265 65.7
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.5e-93 347.1 325 57.5
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.2e-93 345.5 289 62.3
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 9.4e-93 344.4 291 62.2
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 1.2e-92 344.0 289 61.9
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.6e-92 343.6 284 63.0
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 2.7e-92 342.8 291 61.5
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.7e-92 342.8 289 61.9
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 3.0e-91 339.3 285 61.4
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.3e-89 334.0 313 59.4
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 8.3e-89 331.3 291 59.8
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 1.2e-87 327.4 288 60.4
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 5.9e-87 325.1 412 46.6
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 1.0e-86 324.3 247 64.4
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 2.2e-86 323.2 225 70.7
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 3.4e-82 309.3 231 69.3
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 5.4e-80 302.0 190 78.9
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 5.9e-79 298.5 269 61.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 2.9e-78 296.2 188 78.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 4.3e-77 292.4 295 56.3
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 9.2e-72 274.6 235 63.0
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.0e-71 273.5 213 63.8
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 2.7e-71 273.1 254 57.5
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 3.5e-71 272.7 270 51.1
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 7.8e-71 271.6 245 55.5
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.3e-69 265.8 256 53.1
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 2.1e-68 263.5 190 67.9
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.4e-64 250.8 301 51.2
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 4.1e-64 249.2 297 49.8
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 7.8e-63 245.0 262 49.6
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.3e-59 233.4 176 71.0
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 2.6e-58 229.9 272 45.6
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 2.2e-57 226.9 153 73.9
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 8.3e-57 224.9 192 63.0
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 1.0e-54 218.0 251 47.0
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 2.5e-53 213.4 167 67.7
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 7.3e-53 211.8 302 43.0
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 2.4e-48 196.8 136 68.4
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 9.6e-45 184.9 249 41.8
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 1.4e-43 181.0 122 70.5
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.7e-39 166.8 200 46.0
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.5e-34 149.4 163 50.3
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 2.0e-26 124.0 91 67.0
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.8e-19 100.9 76 59.2
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 9.3e-08 62.0 36 83.3
Lsat_1_v5_gn_9_32780 Lactuca sativa HOM05D000379 ORTHO05D024309 2.3e-06 57.4 45 55.6


User provided reference genes

Program Settings