Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 8.1e-132 473.8 244 100.0
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-121 438.7 244 90.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.6e-109 397.9 244 82.8
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.9e-93 346.3 244 72.5
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-87 325.5 244 68.9
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 3.5e-87 325.5 243 67.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.9e-86 322.0 244 68.9
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 6.7e-86 321.2 244 68.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.5e-85 320.1 244 69.3
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 8.2e-84 314.3 247 66.0
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 8.2e-84 314.3 247 66.0
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 2.6e-82 309.3 247 66.4
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 4.2e-80 302.0 248 62.9
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-79 300.1 244 64.3
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-79 300.1 244 64.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.3e-78 296.2 249 62.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.3e-77 292.4 244 60.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 9.7e-77 290.8 248 61.7
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.7e-76 290.0 247 61.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 2.8e-76 289.3 247 59.5
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 4.8e-76 288.5 248 59.3
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 6.3e-76 288.1 242 61.2
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.1e-75 287.3 247 61.5
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.8e-75 286.6 247 60.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.4e-75 286.2 247 61.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.4e-75 286.2 244 59.4
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 5.3e-75 285.0 250 62.0
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.3e-75 285.0 246 60.6
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 5.3e-75 285.0 245 59.6
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 6.9e-75 284.6 251 58.6
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 9.1e-75 284.3 247 59.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.5e-74 283.5 251 60.6
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.6e-74 282.7 245 60.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.6e-74 282.7 244 59.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.4e-74 282.3 248 60.5
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 5.9e-74 281.6 247 59.9
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-74 281.2 243 60.5
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 7.7e-74 281.2 244 58.6
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.0e-73 280.8 252 59.5
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 241 60.6
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 1.7e-73 280.0 244 60.7
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-73 279.6 244 59.0
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.0e-73 278.5 250 60.8
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 1.9e-72 276.6 241 60.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 2.5e-72 276.2 246 56.9
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 5.5e-72 275.0 246 61.0
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 7.2e-72 274.6 176 75.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.6e-71 273.5 250 60.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.1e-71 273.1 245 58.0
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.1e-71 273.1 250 58.4
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.6e-71 272.3 242 59.1
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.7e-71 271.9 246 60.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.1e-71 271.6 245 58.8
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.0e-70 270.8 202 65.8
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.9e-70 268.9 246 55.7
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 5.1e-70 268.5 249 56.6
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 6.7e-70 268.1 181 70.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.7e-70 268.1 251 55.8
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-69 266.9 184 67.9
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.5e-69 266.9 184 67.9
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 2.0e-69 266.5 251 55.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 4.4e-69 265.4 163 79.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 5.7e-69 265.0 248 56.9
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-68 263.5 180 68.3
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.7e-68 263.5 246 54.5
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.7e-68 263.5 244 57.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.2e-68 263.1 176 70.5
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-68 262.7 247 57.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.8e-68 262.7 247 56.7
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-68 262.7 247 56.7
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 2.8e-68 262.7 241 54.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 3.7e-68 262.3 254 54.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.2e-68 261.2 246 54.1
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.1e-67 260.8 247 56.3
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.1e-67 260.8 247 56.3
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.4e-67 260.4 247 56.3
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.8e-67 260.0 179 66.5
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.4e-67 259.6 176 69.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.5e-66 256.9 251 53.8
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.5e-66 256.9 188 64.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 2.0e-66 256.5 247 55.9
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.6e-66 256.1 241 55.6
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.4e-66 255.8 247 56.3
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.4e-66 255.8 246 55.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.5e-66 255.4 246 53.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.9e-66 255.0 241 55.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.9e-66 255.0 253 53.4
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 7.7e-66 254.6 252 54.8
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.0e-65 254.2 198 62.1
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.0e-65 254.2 246 54.9
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 247 56.7
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.3e-65 253.8 247 56.7
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 3.8e-65 252.3 252 54.8
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.8e-65 252.3 245 55.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.8e-65 252.3 246 54.5
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 8.5e-65 251.1 252 53.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 1.4e-64 250.4 204 59.3
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.9e-64 250.0 241 54.8
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.9e-64 250.0 241 54.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.2e-64 248.8 244 54.1
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.6e-63 246.9 228 56.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 2.7e-63 246.1 256 53.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.7e-63 246.1 256 53.5
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.7e-63 246.1 244 53.7
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.6e-63 245.7 250 53.6
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 4.7e-63 245.4 246 54.5
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.0e-62 244.2 239 55.6
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 8.8e-62 241.1 231 54.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 2.0e-61 240.0 244 51.2
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 7.4e-61 238.0 221 54.3
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 9.7e-61 237.7 244 50.4
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.7e-60 236.9 249 50.6
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 4.8e-60 235.3 239 51.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 4.8e-60 235.3 254 51.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.3e-60 235.0 150 73.3
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.2e-60 234.6 161 67.7
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.1e-59 232.3 177 60.5
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 5.3e-59 231.9 242 51.2
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-58 230.3 232 53.4
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.6e-58 230.3 247 50.6
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 3.5e-58 229.2 237 54.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 4.5e-58 228.8 207 55.1
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.0e-57 227.6 171 61.4
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-57 227.3 243 48.6
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.8e-57 225.7 147 72.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 3.8e-57 225.7 177 58.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.1e-56 224.2 225 53.3
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 1.5e-56 223.8 217 53.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 7.2e-56 221.5 254 49.2
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.7e-54 214.9 230 50.9
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 9.7e-53 211.1 173 59.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.7e-52 210.3 222 50.9
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 8.2e-52 208.0 184 53.3
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 8.2e-52 208.0 170 57.1
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.1e-51 207.6 183 55.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.0e-50 203.4 228 50.0
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.5e-50 202.6 164 61.6
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-49 200.7 163 62.6
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 2.9e-49 199.5 106 92.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 3.8e-49 199.1 189 52.4
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 9.4e-48 194.5 186 54.3
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.0e-46 191.0 112 81.2
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.2e-46 188.7 132 64.4
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-42 176.4 147 61.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 1.3e-36 157.5 231 42.4
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 9.5e-32 141.4 150 48.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.1e-31 140.2 169 42.0
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 6.8e-30 135.2 163 42.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.0e-26 122.1 233 33.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.0e-25 119.0 76 71.1
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.9e-24 117.1 147 40.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 5.1e-17 92.4 151 36.4
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.8e-14 84.0 86 46.5
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.5e-13 80.9 113 44.2
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 3.5e-10 69.7 86 37.2
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.2e-07 61.2 54 48.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 1.6e-07 60.8 51 51.0


User provided reference genes

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