Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 8.8e-158 560.5 327 100.0
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 5.7e-141 504.6 327 92.0
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 5.2e-110 401.7 350 66.6
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 3.8e-92 342.4 327 62.7
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.5e-88 329.7 328 60.7
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.8e-87 326.2 329 61.1
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.0e-85 320.1 329 59.9
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.4e-84 315.1 327 59.9
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 5.6e-80 302.0 338 55.6
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 5.3e-78 295.4 252 65.9
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-77 294.3 252 65.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.2e-77 294.3 252 65.1
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 3.8e-76 289.3 253 64.8
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 8.4e-76 288.1 252 63.5
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.1e-75 287.7 328 54.0
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.4e-75 287.3 253 63.6
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 9.3e-75 284.6 254 63.4
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.1e-74 283.5 265 64.2
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.5e-74 282.7 337 53.4
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 4.6e-74 282.3 334 54.2
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 6.0e-74 282.0 338 53.0
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.3e-73 280.8 256 62.5
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 8.7e-73 278.1 260 63.5
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 3.3e-72 276.2 266 61.3
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.8e-71 273.1 253 62.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 9.0e-70 268.1 338 52.7
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.5e-69 267.3 253 60.5
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.5e-69 267.3 250 60.4
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.0e-69 266.9 248 60.1
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.6e-69 266.5 257 61.5
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.1e-67 261.2 251 58.6
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.5e-67 258.8 251 59.4
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 7.9e-66 255.0 248 59.3
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 1.3e-65 254.2 253 57.7
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.8e-65 253.8 255 58.0
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-64 250.8 254 57.1
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.9e-64 250.4 254 58.7
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.5e-64 250.0 251 59.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.3e-64 249.2 338 49.4
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 5.7e-64 248.8 264 58.7
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 9.6e-64 248.1 255 57.3
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.7e-63 246.1 338 49.1
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 4.8e-63 245.7 254 57.5
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.4e-62 244.2 255 56.5
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.4e-62 243.4 338 48.8
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 3.1e-62 243.0 255 57.6
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 5.8e-61 238.8 338 51.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 2.9e-60 236.5 252 57.1
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 5.0e-60 235.7 253 56.5
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 1.2e-58 231.1 251 54.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.6e-58 230.7 255 54.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 2.7e-58 229.9 251 55.4
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 6.1e-58 228.8 258 55.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 5.1e-57 225.7 254 55.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 6.7e-57 225.3 247 55.9
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 1.5e-56 224.2 259 52.9
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.5e-56 223.4 247 55.5
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.6e-55 220.7 259 56.0
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.2e-55 220.3 247 54.7
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 3.7e-55 219.5 264 53.4
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.8e-55 219.2 253 51.8
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 2.4e-54 216.9 256 53.5
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.9e-54 215.3 258 54.3
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 3.4e-53 213.0 255 54.1
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 4.5e-53 212.6 253 53.4
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 4.5e-53 212.6 247 55.1
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 7.7e-53 211.8 258 52.3
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 1.7e-52 210.7 258 55.4
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.7e-52 210.7 256 53.5
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 5.0e-52 209.1 254 52.8
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 5.0e-52 209.1 309 47.2
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 6.5e-52 208.8 264 48.9
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.4e-51 207.6 260 54.2
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.4e-51 204.9 250 52.4
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.1e-50 202.2 251 51.0
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.1e-50 202.2 251 51.0
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.3e-49 200.3 247 53.0
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 8.8e-49 198.4 255 49.8
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.0e-48 197.2 259 50.6
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 4.3e-48 196.1 210 55.2
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 5.7e-48 195.7 272 50.7
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 7.4e-48 195.3 299 45.2
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 1.7e-47 194.1 264 51.1
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 2.2e-47 193.7 248 50.0
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 4.8e-47 192.6 261 49.4
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 6.3e-47 192.2 277 49.5
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 6.3e-47 192.2 268 47.4
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.4e-46 191.0 277 50.9
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.4e-46 191.0 270 45.9
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.8e-46 190.7 259 49.4
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 3.4e-45 186.4 121 82.6
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 5.9e-45 185.7 255 49.8
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 2.9e-44 183.3 266 48.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 6.5e-44 182.2 271 48.0
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.1e-43 181.4 255 50.2
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.4e-43 181.0 261 49.0
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 2.5e-43 180.3 269 47.2
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.5e-43 179.1 287 44.9
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 9.4e-43 178.3 283 46.3
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.1e-42 177.2 261 48.7
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.0e-41 174.9 228 53.5
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-41 174.5 255 49.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 3.0e-41 173.3 259 45.9
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 3.0e-41 173.3 261 49.8
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.0e-41 173.3 253 47.4
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 5.1e-41 172.6 273 45.1
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 4.4e-40 169.5 274 46.4
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 4.4e-40 169.5 221 49.3
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.7e-40 169.1 253 48.2
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.3e-39 167.9 273 46.2
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 2.2e-39 167.2 272 43.8
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 2.2e-39 167.2 272 43.8
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 3.7e-39 166.4 281 41.6
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.7e-39 166.4 257 45.5
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 4.8e-39 166.0 259 45.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 6.3e-39 165.6 255 46.3
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 8.2e-39 165.2 278 46.0
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.1e-38 164.9 232 49.1
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.1e-38 164.9 253 45.8
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 4.1e-38 162.9 251 46.2
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 7.0e-38 162.2 261 47.1
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 9.1e-38 161.8 272 45.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 1.2e-37 161.4 256 45.3
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 3.5e-37 159.8 251 45.0
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 2.9e-36 156.8 256 43.4
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 8.5e-36 155.2 245 43.3
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.5e-35 154.5 257 44.4
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.5e-35 153.7 272 44.5
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.5e-35 153.7 272 44.5
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 2.5e-35 153.7 257 44.7
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.2e-34 151.4 182 50.5
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.6e-34 151.0 253 44.7
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.7e-34 150.2 252 42.5
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 4.7e-34 149.4 257 44.4
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.8e-33 147.5 275 41.1
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.8e-33 147.5 235 46.4
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 3.0e-33 146.7 255 43.9
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.6e-32 143.7 247 40.1
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.6e-32 143.7 247 40.1
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.2e-31 140.6 148 55.4
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.7e-31 139.8 213 45.5
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.1e-27 128.3 149 48.3
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.9e-27 127.5 262 39.7
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-26 124.8 250 40.8
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 4.7e-26 122.9 163 45.4
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 2.2e-23 114.0 253 38.7
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 3.7e-23 113.2 261 36.4
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 7.7e-21 105.5 252 38.1
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 5.5e-19 99.4 138 49.3
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.6e-18 96.7 53 83.0
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 4.7e-18 96.3 101 60.4
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.0e-18 95.5 250 34.0
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 2.0e-16 90.9 165 42.4
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 3.7e-15 86.7 258 36.0
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.4e-14 84.0 250 32.4
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.7e-12 77.8 54 77.8
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 2.3e-12 77.4 67 65.7
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 3.3e-11 73.6 78 59.0
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 3.3e-11 73.6 245 32.7
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 8.0e-10 68.9 67 58.2
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 6.8e-09 65.9 89 39.3
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 5.7e-08 62.8 335 27.2
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 7.5e-08 62.4 81 48.1
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 7.5e-08 62.4 53 66.0
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 9.8e-08 62.0 273 26.7
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 2.2e-07 60.8 81 49.4
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 2.9e-07 60.5 289 30.8
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 4.9e-07 59.7 93 48.4
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 1.1e-06 58.5 172 34.3
Zm00001eb038100 Zea mays HOM05D004504 ORTHO05D005324 1.1e-06 58.5 207 32.4
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 5.4e-06 56.2 309 27.5
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 7.0e-06 55.8 298 26.2


User provided reference genes

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