Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 4.3e-71 271.2 131 100.0
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 4.1e-66 254.6 130 95.4
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 3.9e-64 248.1 130 90.8
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 7.3e-63 243.8 130 88.5
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 7.3e-63 243.8 130 86.9
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 1.2e-62 243.0 130 87.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 2.1e-62 242.3 130 87.7
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 8.1e-62 240.4 130 86.2
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 8.1e-62 240.4 130 86.2
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 8.1e-62 240.4 130 86.9
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.1e-61 240.0 130 86.9
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.1e-61 240.0 130 85.4
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.1e-61 240.0 130 86.2
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.4e-61 239.6 130 88.5
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.4e-61 239.6 130 88.5
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.8e-61 239.2 130 86.2
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 1.8e-61 239.2 130 85.4
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.8e-61 239.2 130 86.2
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.3e-61 238.8 130 87.7
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 3.1e-61 238.4 130 87.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.0e-61 238.0 130 86.2
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 4.0e-61 238.0 130 86.2
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 4.0e-61 238.0 130 87.7
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 4.0e-61 238.0 130 88.5
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 5.2e-61 237.7 130 86.9
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 5.2e-61 237.7 130 86.2
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 5.2e-61 237.7 130 85.4
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 6.8e-61 237.3 130 86.9
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 6.8e-61 237.3 130 86.9
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 6.8e-61 237.3 130 86.9
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 6.8e-61 237.3 130 86.9
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 8.9e-61 236.9 130 86.9
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 8.9e-61 236.9 130 86.9
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 8.9e-61 236.9 130 86.9
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.2e-60 236.5 130 86.9
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 1.2e-60 236.5 130 86.9
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 1.2e-60 236.5 130 84.6
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.5e-60 236.1 130 85.4
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.5e-60 236.1 130 86.2
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.5e-60 236.1 130 85.4
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.6e-60 235.3 130 86.2
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.6e-60 235.3 130 86.2
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.4e-60 235.0 130 83.8
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 4.4e-60 234.6 130 86.2
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 4.4e-60 234.6 130 84.6
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 4.4e-60 234.6 130 83.8
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 5.8e-60 234.2 130 85.4
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 5.8e-60 234.2 130 83.8
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 5.8e-60 234.2 130 83.8
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 84.6
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 84.6
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 85.4
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 85.4
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 83.8
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 7.5e-60 233.8 130 83.8
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 9.8e-60 233.4 130 85.4
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 9.8e-60 233.4 130 83.8
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.2e-59 232.3 130 83.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 2.2e-59 232.3 130 83.1
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 2.2e-59 232.3 130 83.1
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 2.9e-59 231.9 130 85.4
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.9e-59 231.9 130 84.6
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.9e-59 231.9 130 82.3
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 3.7e-59 231.5 130 83.8
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 4.9e-59 231.1 130 80.8
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 4.9e-59 231.1 130 83.1
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 8.3e-59 230.3 130 83.8
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 8.3e-59 230.3 130 83.8
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 8.3e-59 230.3 130 84.6
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 1.1e-58 229.9 130 83.1
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.9e-58 229.2 130 83.8
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.9e-58 229.2 130 83.1
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.9e-58 229.2 130 83.1
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.4e-58 228.8 130 82.3
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 2.4e-58 228.8 130 83.1
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.2e-58 228.4 130 83.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.2e-58 228.4 130 83.1
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 5.4e-58 227.6 130 82.3
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 7.1e-58 227.3 130 80.8
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 7.1e-58 227.3 130 80.8
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 7.1e-58 227.3 130 80.8
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 7.1e-58 227.3 130 80.8
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 9.2e-58 226.9 130 82.3
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 9.2e-58 226.9 130 83.1
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.2e-57 226.5 130 82.3
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.6e-57 226.1 130 80.8
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.6e-57 226.1 130 81.5
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.6e-57 226.1 130 81.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.1e-57 225.7 130 81.5
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.7e-57 225.3 130 81.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.7e-57 225.3 130 81.5
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 3.5e-57 224.9 130 81.5
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 4.6e-57 224.6 130 81.5
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 7.8e-57 223.8 130 80.8
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 1.0e-56 223.4 130 80.8
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.3e-56 222.2 130 81.5
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 5.1e-56 221.1 130 80.8
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.9e-55 219.2 130 79.2
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 5.6e-55 217.6 130 80.0
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.1e-54 215.7 130 77.7
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 3.1e-53 211.8 130 74.6
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 8.9e-53 210.3 130 73.8
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.6e-52 208.8 130 74.6
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 9.9e-52 206.8 130 75.4
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.1e-50 203.4 130 68.5
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.4e-50 203.0 130 69.2
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.4e-50 202.2 129 71.3
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 9.2e-50 200.3 129 72.1
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 4.4e-44 181.4 129 61.2
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.4e-42 176.4 97 83.5
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 6.4e-27 124.4 65 84.6
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-13 79.3 65 63.1
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.2e-11 72.8 103 42.7


User provided reference genes

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