Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 4.9e-54 214.2 103 100.0
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.4e-53 211.8 103 99.0
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 5.0e-51 204.1 103 95.1
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 2.5e-50 201.8 103 94.2
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 1.2e-49 199.5 103 93.2
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 1.2e-49 199.5 103 93.2
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 2.8e-49 198.4 103 92.2
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 5.2e-48 194.1 102 88.2
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 1.2e-47 193.0 103 86.4
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.4e-47 191.0 103 87.4
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 85.4
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 86.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 7.5e-47 190.3 103 84.5
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 84.5
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 85.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 84.5
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 2.9e-46 188.3 100 87.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 2.9e-46 188.3 103 85.4
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.9e-46 188.3 102 84.3
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.7e-46 188.0 103 85.4
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 4.9e-46 187.6 101 85.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 4.9e-46 187.6 101 85.1
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 83.5
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.1e-45 186.4 103 82.5
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 2.4e-45 185.3 103 82.5
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 3.2e-45 184.9 103 81.6
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.2e-45 184.9 103 81.6
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.2e-45 184.9 101 84.2
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.2e-45 184.9 112 79.5
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 81.6
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 7.0e-45 183.7 102 82.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 7.0e-45 183.7 103 82.5
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 9.2e-45 183.3 102 82.4
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.2e-44 183.0 103 81.6
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.2e-44 183.0 101 83.2
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.2e-44 183.0 103 82.5
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.6e-44 182.6 100 83.0
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 78.6
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.5e-44 181.4 101 82.2
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 80.6
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.5e-44 181.4 102 79.4
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 6.0e-44 180.6 102 81.4
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 7.8e-44 180.3 101 83.2
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 7.8e-44 180.3 103 81.6
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 1.0e-43 179.9 103 80.6
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.0e-43 179.9 100 84.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.3e-43 179.5 100 81.0
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.3e-43 179.5 103 81.6
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 1.7e-43 179.1 99 81.8
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.7e-43 179.1 103 80.6
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.7e-43 179.1 107 80.4
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.3e-43 178.7 103 81.6
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 3.0e-43 178.3 102 80.4
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 5.0e-43 177.6 99 80.8
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.1e-42 176.4 103 78.6
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-42 176.0 103 79.6
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.5e-42 176.0 103 79.6
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.5e-42 176.0 103 79.6
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.5e-42 175.3 100 80.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.3e-42 174.5 100 79.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 7.3e-42 173.7 102 78.4
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 7.3e-42 173.7 101 78.2
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 9.5e-42 173.3 101 78.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.1e-41 172.2 114 72.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.1e-41 172.2 92 85.9
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 4.7e-41 171.0 101 79.2
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 4.7e-41 171.0 103 77.7
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 6.2e-41 170.6 103 74.8
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.1e-40 169.9 99 78.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.1e-40 169.9 99 78.8
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.1e-40 169.9 94 81.9
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.8e-40 169.1 101 73.3
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 1.8e-40 169.1 99 75.8
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 2.3e-40 168.7 101 75.2
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 5.2e-40 167.5 100 72.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 5.2e-40 167.5 100 77.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 8.9e-40 166.8 101 71.3
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 8.9e-40 166.8 101 76.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 2.0e-39 165.6 100 71.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 2.0e-39 165.6 100 73.0
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 4.4e-39 164.5 101 76.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 7.5e-39 163.7 99 71.7
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 7.5e-39 163.7 99 71.7
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 7.5e-39 163.7 99 71.7
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 7.5e-39 163.7 99 71.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 7.5e-39 163.7 92 82.6
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 2.2e-38 162.2 98 71.4
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 2.2e-38 162.2 101 68.3
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 3.7e-38 161.4 98 71.4
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 6.4e-38 160.6 99 70.7
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 6.4e-38 160.6 101 71.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 8.3e-38 160.2 99 69.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 8.3e-38 160.2 94 78.7
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 1.4e-37 159.5 98 70.4
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 7.0e-37 157.1 98 68.4
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 7.8e-36 153.7 101 66.3
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 6.2e-33 144.1 101 64.4
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 8.1e-33 143.7 100 61.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 3.1e-32 141.7 92 66.3
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 1.2e-31 139.8 74 86.5
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 1.5e-31 139.4 74 89.2
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.3e-30 136.3 71 87.3
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.7e-30 136.0 100 56.0
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 2.9e-30 135.2 99 53.5
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 6.4e-30 134.0 74 82.4
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 1.1e-29 133.3 82 73.2
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 1.4e-29 132.9 71 87.3
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.4e-29 132.9 101 55.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 4.1e-29 131.3 101 55.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.4e-29 131.0 72 81.9
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 9.2e-29 130.2 71 83.1
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.6e-28 129.4 74 82.4
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 4.6e-28 127.9 75 76.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.7e-27 125.9 72 77.8
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.1e-26 123.2 71 77.5
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 7.3e-26 120.6 99 51.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.4e-24 116.3 69 73.9
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 4.0e-24 114.8 76 63.2
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 6.4e-22 107.5 104 54.8
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 9.2e-21 103.6 64 76.6
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.7e-19 99.4 64 76.6
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 9.3e-13 77.0 54 63.0
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 2.1e-09 65.9 34 85.3
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.1e-08 63.5 40 72.5
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 2.4e-08 62.4 42 66.7
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 3.1e-08 62.0 34 82.4


User provided reference genes

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