Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 2.1e-91 339.0 166 100.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-84 316.2 181 88.4
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 8.0e-83 310.5 181 86.7
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 2.0e-81 305.8 181 84.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.8e-81 304.3 181 82.9
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.8e-81 304.3 181 83.4
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 7.5e-81 303.9 177 84.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 7.5e-81 303.9 177 85.9
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 3.7e-80 301.6 177 83.6
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-80 301.2 177 83.1
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.9e-80 301.2 177 83.1
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 1.1e-79 300.1 177 85.9
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 2.4e-79 298.9 177 83.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.4e-79 298.9 177 83.6
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.1e-79 298.1 177 83.6
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 9.2e-79 297.0 177 84.7
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.2e-78 296.6 177 82.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.2e-78 296.6 177 81.9
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.6e-78 296.2 177 82.5
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.6e-78 296.2 177 82.5
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.6e-78 296.2 177 83.6
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 3.5e-78 295.0 177 81.4
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.3e-77 293.1 181 81.8
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.7e-77 292.7 178 82.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.0e-77 292.0 177 80.8
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.9e-77 291.6 177 81.9
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 5.0e-77 291.2 178 80.9
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.1e-76 290.0 177 79.7
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.5e-76 289.7 178 81.5
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.9e-76 289.3 176 80.1
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.3e-76 288.1 177 81.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 5.6e-76 287.7 177 80.8
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 7.3e-76 287.3 178 79.8
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 7.3e-76 287.3 178 79.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.2e-75 286.6 181 80.7
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.2e-75 286.6 178 80.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.6e-75 286.2 176 79.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.6e-75 285.0 177 80.2
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.6e-75 285.0 174 83.9
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.7e-75 284.6 177 78.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 4.7e-75 284.6 176 80.7
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.2e-75 284.3 178 79.2
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.2e-75 284.3 181 76.2
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 6.2e-75 284.3 176 81.8
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 6.2e-75 284.3 177 80.2
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 8.0e-75 283.9 174 83.3
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-74 283.5 179 78.8
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 1.1e-74 283.5 176 79.5
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 80.3
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.8e-74 282.7 177 79.7
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.8e-74 282.7 178 80.3
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.1e-74 282.0 181 75.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.0e-74 281.6 177 80.8
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 4.0e-74 281.6 176 80.1
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 5.2e-74 281.2 177 79.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 8.9e-74 280.4 167 83.8
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 8.9e-74 280.4 177 77.4
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.5e-73 279.6 175 79.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.4e-73 278.5 177 76.8
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 4.4e-73 278.1 178 75.8
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.4e-73 278.1 178 77.0
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 5.8e-73 277.7 176 76.7
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 5.8e-73 277.7 168 82.7
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 7.5e-73 277.3 178 76.4
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.5e-73 277.3 175 81.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.5e-73 277.3 177 77.4
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.8e-73 276.9 177 78.0
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.8e-73 276.9 177 78.0
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.3e-72 276.6 175 77.1
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.3e-72 276.6 178 78.7
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.3e-72 276.6 178 75.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-72 275.8 177 76.3
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-72 275.8 177 76.3
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 2.2e-72 275.8 176 78.4
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 2.9e-72 275.4 178 75.8
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 2.9e-72 275.4 178 75.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.9e-72 275.4 178 75.8
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 3.7e-72 275.0 199 72.4
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.9e-72 274.6 176 76.7
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 4.9e-72 274.6 176 76.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.4e-72 274.2 177 75.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 6.4e-72 274.2 178 75.8
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 8.3e-72 273.9 177 75.7
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 8.3e-72 273.9 177 75.7
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 8.3e-72 273.9 170 78.8
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.1e-71 273.5 180 76.1
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.4e-71 273.1 176 75.0
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-71 273.1 170 80.6
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.4e-71 273.1 178 77.5
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.4e-71 273.1 169 79.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-71 273.1 181 76.8
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.9e-71 272.7 177 75.7
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.4e-71 272.3 200 71.5
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.4e-71 272.3 179 77.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 4.1e-71 271.6 177 75.7
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.2e-70 270.0 178 77.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.6e-70 269.6 181 75.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.1e-70 269.2 177 76.3
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.1e-70 269.2 169 79.3
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.7e-70 268.9 178 76.4
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 3.5e-70 268.5 178 77.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 4.6e-70 268.1 177 78.0
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.0e-69 266.9 166 78.3
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 1.0e-69 266.9 166 78.3
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.3e-69 266.5 178 75.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.0e-69 265.4 168 79.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 3.9e-69 265.0 181 74.6
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.9e-69 265.0 177 71.8
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 5.1e-69 264.6 169 76.9
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-69 264.6 161 83.9
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.5e-68 262.3 176 75.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.5e-68 262.3 181 74.0
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 3.3e-68 261.9 180 76.1
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 3.3e-68 261.9 180 76.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.3e-68 261.5 175 76.0
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 5.6e-68 261.2 176 76.1
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 9.5e-68 260.4 168 78.6
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-67 260.0 168 75.6
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 3.6e-67 258.5 169 75.1
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.4e-66 256.5 168 75.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.8e-66 256.1 168 75.0
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.2e-65 253.4 179 72.1
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.4e-63 246.5 168 74.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 3.5e-62 241.9 166 69.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.0e-61 238.8 258 53.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 5.1e-61 238.0 178 69.1
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 5.6e-60 234.6 177 67.8
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 3.6e-59 231.9 150 78.7
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.7e-56 223.0 173 63.6
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 3.8e-56 221.9 148 76.4
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 1.9e-55 219.5 176 63.6
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 4.2e-55 218.4 176 62.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.7e-53 213.0 174 61.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.9e-52 209.5 181 64.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.3e-44 182.2 123 73.2
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.0e-41 172.9 157 61.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 3.4e-41 172.2 172 51.7
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.2e-32 142.9 80 86.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 6.5e-32 141.4 100 75.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.0e-29 132.5 172 39.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.4e-26 123.6 176 38.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.8e-26 123.2 102 65.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.1e-26 122.5 65 87.7
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 9.0e-26 120.9 116 59.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.5e-23 112.8 99 60.6
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.2e-22 110.5 57 87.7
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.4e-20 101.3 51 92.2
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 7.4e-20 101.3 209 38.3
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.3e-19 100.5 83 65.1
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-17 93.2 75 65.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.0e-17 93.2 75 65.3
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 7.7e-17 91.3 166 33.1
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.9e-16 89.4 165 34.5
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.8e-13 80.1 90 50.0
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.1e-12 77.4 70 57.1
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.8e-11 72.8 37 91.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 2.8e-11 72.8 88 48.9
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 4.8e-11 72.0 43 81.4
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.5e-09 67.0 50 68.0
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.5e-09 65.5 42 76.2
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.9e-09 65.1 43 69.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.0e-08 64.3 50 66.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 6.5e-08 61.6 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 6.5e-08 61.6 38 73.7
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-07 60.8 33 84.8
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 4.2e-07 58.9 43 67.4


User provided reference genes

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