Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 9.8e-22 105.9 54 100.0
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 4.2e-17 90.5 54 85.2
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 1.2e-16 89.0 54 81.5
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 3.6e-16 87.4 54 83.3
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 3.4e-14 80.9 54 77.8
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 4.9e-13 77.0 54 77.8
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 3.2e-12 74.3 54 72.2
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 3.2e-12 74.3 51 74.5
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 7.0e-12 73.2 47 80.9
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 1.2e-11 72.4 54 72.2
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 1.2e-11 72.4 54 72.2
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.6e-11 72.0 54 72.2
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.0e-11 71.6 46 80.4
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.0e-11 71.6 46 80.4
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 2.0e-11 71.6 45 82.2
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 2.7e-11 71.2 47 76.6
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 7.8e-11 69.7 48 77.1
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.0e-10 69.3 55 70.9
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 1.7e-10 68.6 45 80.0
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 2.9e-10 67.8 54 66.7
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 3.9e-10 67.4 51 72.5
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 3.9e-10 67.4 54 66.7
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 3.9e-10 67.4 45 75.6
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 5.0e-10 67.0 54 64.8
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 8.6e-10 66.2 54 57.4
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 1.1e-09 65.9 50 70.0
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 1.1e-09 65.9 54 64.8
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 1.5e-09 65.5 54 63.0
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 1.5e-09 65.5 46 71.7
Zm00001eb221680 Zea mays HOM05D007824 ORTHO05D009875 1.5e-09 65.5 47 68.1
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 2.5e-09 64.7 45 77.8
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 4.3e-09 63.9 46 73.9
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 4.3e-09 63.9 44 75.0
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 5.6e-09 63.5 54 61.1
AT5G10745 Arabidopsis thaliana HOM05D007824 ORTHO05D009875 7.3e-09 63.2 46 69.6
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 7.3e-09 63.2 46 67.4
BcaB01g05502 Brassica carinata HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
BcaB01g06276 Brassica carinata HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
A03p04740 Brassica napus HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
C03p05450 Brassica napus HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
BraA03t09814Z Brassica rapa HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 9.5e-09 62.8 46 67.4
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 1.2e-08 62.4 49 61.2
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 1.6e-08 62.0 54 61.1
AL6G21300 Arabidopsis lyrata HOM05D007824 ORTHO05D009875 2.1e-08 61.6 46 67.4
Carub.0006s0922 Capsella rubella HOM05D007824 ORTHO05D009875 2.8e-08 61.2 46 65.2
CARHR202570 Cardamine hirsuta HOM05D007824 ORTHO05D009875 2.8e-08 61.2 46 71.7
Thhalv10015471m.g Eutrema salsugineum HOM05D007824 ORTHO05D009875 2.8e-08 61.2 46 71.7
Os10g0478900 Oryza sativa ssp. japonica HOM05D007824 ORTHO05D009875 2.8e-08 61.2 44 68.2
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 2.8e-08 61.2 54 59.3
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.7e-08 60.5 54 64.8
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 4.7e-08 60.5 54 59.3
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 8.0e-08 59.7 54 63.0
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.0e-07 57.4 54 61.1
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.0e-07 57.4 53 62.3
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 4.0e-07 57.4 54 57.4
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 4.0e-07 57.4 54 55.6
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.2e-07 57.0 54 61.1
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 8.9e-07 56.2 54 57.4
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 2.6e-06 54.7 55 60.0
arahy.Tifrunner.gnm1.ann1.58R7DF Arachis hypogaea HOM05D007824 ORTHO05D009875 3.4e-06 54.3 60 51.7
arahy.Tifrunner.gnm1.ann1.A82CWH Arachis hypogaea HOM05D007824 ORTHO05D009875 3.4e-06 54.3 60 51.7
DCAR_000681 Daucus carota HOM05D007824 ORTHO05D009875 5.8e-06 53.5 38 63.2
Lj5g0022212 Lotus japonicus HOM05D007824 ORTHO05D009875 7.5e-06 53.1 52 55.8
Medtr1g013350 Medicago truncatula HOM05D007824 ORTHO05D009875 7.5e-06 53.1 39 66.7


User provided reference genes

Program Settings