Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1627.1 815 100.0
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1528.5 821 92.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1505.0 820 91.2
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1502.3 820 91.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1497.6 820 91.0
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1494.2 820 90.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1470.3 809 90.7
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1409.8 821 85.0
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 821 84.8
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 820 84.3
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1382.1 802 85.2
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1377.5 823 83.4
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 812 84.4
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 804 85.9
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1369.8 778 87.1
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 806 84.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 804 85.4
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1364.7 804 85.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 822 83.3
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1361.7 801 84.3
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 800 84.0
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 805 84.7
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1355.1 821 82.6
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1353.6 823 83.4
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1353.2 805 84.5
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 803 84.1
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1351.7 822 83.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 803 83.8
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 817 82.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1341.3 804 83.3
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 844 80.0
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 804 83.3
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 834 80.5
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1337.8 822 81.9
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1337.0 816 82.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 808 82.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1333.9 803 83.2
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 817 81.8
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 803 82.7
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 802 82.9
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 793 83.4
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 799 83.1
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 803 81.9
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 806 82.6
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 803 81.7
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1326.2 820 81.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 802 82.3
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1323.5 799 81.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 803 81.3
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1321.2 799 81.7
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 852 79.0
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 797 82.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 823 81.2
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 823 80.6
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 822 81.8
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 800 82.0
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 793 82.5
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1316.6 798 82.3
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 814 81.0
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1312.0 804 81.7
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 803 82.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1310.8 824 80.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1310.4 820 80.7
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 817 80.8
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 804 81.6
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 821 80.1
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 802 81.2
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 802 81.5
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 801 81.6
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 847 77.8
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 837 75.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 804 81.3
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1291.9 801 79.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 798 80.1
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 802 80.0
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 798 80.2
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1284.2 810 79.0
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 804 80.6
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 762 84.0
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 808 79.2
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 859 75.8
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 803 79.1
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 799 79.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 811 78.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 801 79.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 805 78.9
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 810 79.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 813 79.0
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1268.1 807 79.3
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 800 79.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1264.6 800 79.2
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1263.8 798 79.1
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 802 79.2
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1260.4 802 79.1
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 802 78.9
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1258.0 802 79.2
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1256.5 820 77.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 800 78.1
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1254.2 811 78.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 824 76.8
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1253.0 817 77.5
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 859 76.0
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1249.6 806 77.4
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 804 78.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 804 78.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1248.4 804 78.0
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 761 81.6
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1243.4 803 78.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 823 76.4
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 823 76.4
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 823 76.4
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 823 76.4
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1241.1 802 77.6
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 813 73.1
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1238.0 818 77.4
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1237.2 798 79.3
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 814 77.4
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1234.2 798 77.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 804 76.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 838 74.9
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1231.9 823 77.3
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 823 77.3
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 804 77.5
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1228.8 812 77.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 763 79.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 843 74.4
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1205.7 763 78.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1200.7 870 71.5
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1195.6 806 76.6
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 820 75.1
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1192.2 759 78.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1187.2 813 74.0
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1177.2 802 75.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1174.8 675 85.5
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1161.0 811 71.5
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1156.7 763 74.4
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1147.9 802 74.8
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1145.6 798 72.1
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1123.2 795 72.1
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1113.6 801 70.7
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1087.8 711 78.8
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.2e-306 1055.4 815 69.0
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 4.4e-291 1004.6 577 82.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 6.8e-276 954.1 643 70.0
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 2.0e-267 926.0 604 74.5
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.4e-267 925.2 803 63.4
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.4e-265 919.8 524 84.7
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.8e-253 879.0 519 85.9
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.6e-187 659.8 710 53.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.6e-150 537.0 465 59.6
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.4e-142 510.0 308 79.9
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 7.8e-131 472.2 334 77.8
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 7.4e-105 386.0 301 71.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 4.1e-103 380.2 279 68.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.8e-102 376.3 397 53.9
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-91 341.3 584 45.0
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.6e-59 235.3 156 76.9
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.6e-49 201.4 116 83.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.7e-45 188.7 163 58.3
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 4.3e-36 157.5 503 28.8
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.9e-32 144.8 461 28.4
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 2.4e-31 141.7 76 84.2
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.6e-30 137.5 474 27.0
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.0e-30 137.1 468 27.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.2e-27 127.1 64 89.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.3e-26 125.2 109 54.1
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 3.1e-26 124.8 441 26.1
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 4.4e-25 120.9 96 65.6
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-16 90.1 266 27.4
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.9e-15 89.0 155 38.1
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-15 88.2 220 31.4
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.1e-12 79.7 42 85.7
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.5e-12 78.6 83 45.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-08 63.5 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 1.6e-06 59.3 38 73.7


User provided reference genes

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