Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 2.4e-93 345.5 175 100.0
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 5.3e-77 291.2 175 87.4
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 3.4e-76 288.5 175 87.4
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 4.2e-74 281.6 175 84.6
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 6.5e-67 257.7 175 77.1
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.6e-65 253.1 176 76.7
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 2.0e-63 246.1 175 73.1
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 4.4e-63 245.0 182 71.4
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 4.4e-63 245.0 177 71.2
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 7.4e-63 244.2 175 72.6
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 9.7e-63 243.8 177 72.3
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-62 243.4 174 71.8
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-62 243.4 174 71.8
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 2.8e-62 242.3 170 74.7
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 8.2e-62 240.7 177 70.6
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 8.2e-62 240.7 177 72.3
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.4e-61 240.0 164 75.0
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.4e-61 240.0 178 71.9
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.8e-61 239.6 177 69.5
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.8e-61 239.6 176 72.2
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 3.1e-61 238.8 177 70.1
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 3.1e-61 238.8 177 69.5
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 3.1e-61 238.8 174 71.3
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 3.1e-61 238.8 177 70.6
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 3.1e-61 238.8 175 71.4
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.1e-61 238.8 176 71.6
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 4.1e-61 238.4 177 68.9
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 4.1e-61 238.4 177 70.6
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 5.3e-61 238.0 177 72.9
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 9.1e-61 237.3 181 70.7
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.6e-60 236.5 177 71.2
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.6e-60 236.5 177 69.5
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.6e-60 236.5 176 70.5
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 2.0e-60 236.1 167 71.3
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 2.6e-60 235.7 177 70.6
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 2.6e-60 235.7 177 68.4
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 3.5e-60 235.3 169 71.0
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 4.5e-60 235.0 164 73.8
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 4.5e-60 235.0 178 69.1
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 7.7e-60 234.2 166 72.3
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.0e-59 233.8 177 70.1
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 1.0e-59 233.8 161 73.9
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 1.3e-59 233.4 174 70.1
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.7e-59 233.0 169 74.6
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 5.0e-59 231.5 180 67.8
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 5.0e-59 231.5 165 72.7
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 5.0e-59 231.5 172 71.5
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 5.0e-59 231.5 175 69.1
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 6.5e-59 231.1 166 71.7
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 6.5e-59 231.1 177 71.2
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.5e-58 229.9 167 72.5
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.5e-58 229.9 174 71.3
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.5e-58 229.2 175 68.0
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 3.2e-58 228.8 175 68.0
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 3.2e-58 228.8 175 68.0
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 3.2e-58 228.8 169 70.4
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 4.2e-58 228.4 165 71.5
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 4.2e-58 228.4 168 72.0
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 4.2e-58 228.4 175 68.0
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.5e-58 228.0 178 69.7
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 9.4e-58 227.3 176 67.6
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 9.4e-58 227.3 169 71.0
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.2e-57 226.9 170 68.2
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 1.6e-57 226.5 175 68.0
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.7e-57 224.9 178 66.9
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 4.7e-57 224.9 177 68.9
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 6.1e-57 224.6 176 67.6
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 8.0e-57 224.2 154 73.4
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.0e-56 223.8 171 70.2
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.4e-56 223.4 178 67.4
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 1.4e-56 223.4 177 67.8
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 2.3e-56 222.6 164 72.6
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 3.0e-56 222.2 145 77.2
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 3.0e-56 222.2 175 68.6
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 4.0e-56 221.9 164 71.3
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 5.2e-56 221.5 144 79.9
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 5.2e-56 221.5 171 70.2
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 5.2e-56 221.5 144 79.9
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 6.8e-56 221.1 175 68.0
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 6.8e-56 221.1 174 67.2
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 8.8e-56 220.7 153 72.5
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.5e-55 219.9 175 68.6
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 3.4e-55 218.8 176 66.5
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 4.4e-55 218.4 166 68.7
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 7.5e-55 217.6 175 68.0
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 1.7e-54 216.5 140 80.0
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.8e-54 215.7 175 65.1
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 3.7e-54 215.3 151 74.2
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 8.3e-54 214.2 150 74.0
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 1.8e-53 213.0 143 75.5
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 2.4e-53 212.6 145 77.2
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.4e-53 212.6 212 58.0
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 4.1e-53 211.8 151 72.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 4.1e-53 211.8 205 58.5
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 4.1e-53 211.8 150 73.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 5.4e-53 211.5 166 67.5
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 5.4e-53 211.5 152 72.4
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.2e-52 210.3 171 63.2
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.2e-52 210.3 146 72.6
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.7e-52 209.1 161 69.6
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 1.7e-51 206.5 167 65.9
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 6.5e-51 204.5 165 64.2
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.1e-50 203.8 174 62.6
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.5e-50 203.4 164 67.1
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 9.4e-50 200.7 157 65.0
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.2e-49 200.3 160 68.1
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 3.6e-49 198.7 145 72.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 3.6e-49 198.7 183 61.2
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 4.0e-48 195.3 161 65.2
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 2.6e-47 192.6 161 63.4
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 3.4e-47 192.2 175 59.4
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.4e-47 192.2 167 61.1
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 1.7e-46 189.9 136 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.8e-46 189.1 168 58.3
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 7.0e-45 184.5 137 65.7
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 3.8e-43 178.7 175 58.9
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 1.5e-42 176.8 147 62.6
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.6e-41 173.3 140 63.6
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 5.7e-39 164.9 136 60.3
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 3.7e-38 162.2 170 57.1
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 1.6e-33 146.7 130 59.2
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 4.7e-33 145.2 139 55.4
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.4e-31 138.7 122 59.0
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 4.4e-31 138.7 122 60.7
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 4.1e-29 132.1 122 56.6
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 6.0e-28 128.3 122 55.7
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.0e-27 127.5 122 55.7
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 7.3e-26 121.3 103 58.3
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.6e-25 120.2 112 59.8
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 2.8e-25 119.4 81 70.4
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 4.7e-25 118.6 92 70.7
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.4e-24 117.1 102 63.7
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 3.1e-24 115.9 136 48.5
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 4.0e-24 115.5 95 65.3
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 4.0e-24 115.5 80 73.8
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 1.2e-23 114.0 95 63.2
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.5e-23 113.6 112 57.1
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 3.4e-23 112.5 82 65.9
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.3e-22 110.5 86 68.6
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.7e-22 110.2 98 63.3
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.2e-22 109.8 93 63.4
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 2.9e-22 109.4 101 62.4
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 2.9e-22 109.4 152 42.1
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 3.7e-22 109.0 94 68.1
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 4.9e-22 108.6 153 47.1
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 4.6e-20 102.1 65 78.5
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.0e-19 99.4 58 84.5
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 3.9e-19 99.0 88 58.0
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.3e-18 95.9 58 84.5
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 4.3e-18 95.5 103 51.5
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.6e-17 93.6 70 65.7
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 3.6e-17 92.4 125 48.0
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-13 80.5 69 59.4
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 1.9e-13 80.1 63 65.1
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 9.2e-13 77.8 64 70.3
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 9.2e-13 77.8 64 70.3
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 2.3e-11 73.2 56 62.5
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 3.9e-11 72.4 66 62.1
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.6e-09 67.0 45 73.3
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 2.1e-09 66.6 122 39.3
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 8.1e-09 64.7 55 58.2
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.0e-07 60.1 68 47.1
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 9.9e-07 57.8 59 52.5
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.3e-06 57.4 48 60.4
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 2.2e-06 56.6 31 80.6
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 8.4e-06 54.7 37 73.0


User provided reference genes

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