Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 6.9e-119 430.6 215 100.0
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 9.7e-89 330.5 214 81.8
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 2.5e-84 315.8 175 92.6
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.5e-76 290.0 175 87.4
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 4.2e-76 288.5 211 73.9
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 8.0e-75 284.3 213 73.7
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 8.3e-72 274.2 216 66.7
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 3.1e-71 272.3 216 66.2
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 7.0e-71 271.2 187 74.3
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 7.0e-71 271.2 198 70.7
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 1.7e-69 266.5 182 75.3
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.7e-69 266.5 182 73.6
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 2.9e-69 265.8 182 75.3
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 5.0e-69 265.0 177 75.1
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 6.5e-69 264.6 170 80.0
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 8.5e-69 264.2 175 76.6
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.5e-69 264.2 182 75.3
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.5e-68 263.5 189 72.0
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.5e-68 263.5 215 66.0
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.5e-68 262.7 179 74.3
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 4.2e-68 261.9 177 76.3
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 5.5e-68 261.5 179 73.7
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 5.5e-68 261.5 177 74.0
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 9.4e-68 260.8 181 75.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 9.4e-68 260.8 182 72.0
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 9.4e-68 260.8 174 75.9
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.2e-67 260.4 179 73.2
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 1.2e-67 260.4 194 70.1
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 1.2e-67 260.4 194 70.1
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.6e-67 260.0 178 73.6
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.6e-67 260.0 176 76.1
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 2.1e-67 259.6 218 65.6
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.1e-67 259.6 177 75.7
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.7e-67 259.2 175 76.0
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 3.6e-67 258.8 172 77.3
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 3.6e-67 258.8 201 69.7
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 4.7e-67 258.5 200 68.0
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 6.1e-67 258.1 183 71.6
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 6.1e-67 258.1 177 76.8
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 8.0e-67 257.7 191 72.8
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.0e-66 257.3 204 68.6
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.0e-66 257.3 168 78.0
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.4e-66 256.9 182 72.0
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 3.0e-66 255.8 176 73.3
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 3.0e-66 255.8 169 75.1
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 3.0e-66 255.8 170 77.1
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 3.0e-66 255.8 177 75.7
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.0e-66 255.4 178 74.2
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 4.0e-66 255.4 176 73.9
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 6.8e-66 254.6 176 73.3
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 8.8e-66 254.2 175 73.7
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 1.5e-65 253.4 175 73.1
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.5e-65 253.4 164 78.0
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.0e-65 253.1 175 73.1
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.0e-65 253.1 175 73.1
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.6e-65 252.7 217 65.9
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 4.4e-65 251.9 175 73.7
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 4.4e-65 251.9 182 72.0
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 5.7e-65 251.5 168 75.0
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 5.7e-65 251.5 177 75.1
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 5.7e-65 251.5 174 73.6
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 9.8e-65 250.8 182 71.4
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.7e-64 250.0 165 77.0
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 2.8e-64 249.2 174 74.1
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 3.7e-64 248.8 165 75.8
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 3.7e-64 248.8 169 74.6
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 3.7e-64 248.8 174 73.6
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 6.3e-64 248.1 178 73.6
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.4e-63 246.1 169 74.6
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.1e-63 245.7 178 72.5
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 3.1e-63 245.7 174 72.4
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 7.0e-63 244.6 192 68.8
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 9.2e-63 244.2 145 82.8
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.2e-62 243.8 164 76.8
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 1.6e-62 243.4 177 70.6
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.6e-62 243.4 144 85.4
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.6e-62 243.4 144 85.4
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.7e-62 242.7 169 73.4
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 4.5e-62 241.9 171 72.5
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.3e-61 240.4 169 73.4
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 1.7e-61 240.0 191 66.0
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 2.3e-61 239.6 137 86.9
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.8e-61 238.8 149 82.6
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 3.8e-61 238.8 185 69.7
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 1.5e-60 236.9 145 83.4
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.5e-60 236.9 150 80.0
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 3.3e-60 235.7 184 70.1
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 4.3e-60 235.3 175 70.9
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 4.3e-60 235.3 150 79.3
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.3e-60 235.3 175 68.6
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 7.3e-60 234.6 216 60.6
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 7.3e-60 234.6 149 79.9
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 7.3e-60 234.6 152 77.6
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 9.5e-60 234.2 151 78.1
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.2e-59 233.8 197 61.4
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 1.2e-59 233.8 212 61.8
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.6e-59 233.4 171 68.4
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 3.6e-59 232.3 143 79.7
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 4.7e-59 231.9 166 71.7
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.0e-58 230.7 214 61.2
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 4.0e-58 228.8 191 63.4
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.2e-57 227.3 168 70.8
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.2e-56 223.0 196 62.2
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 2.2e-56 223.0 184 64.7
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.9e-56 222.6 190 62.1
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 4.9e-56 221.9 157 70.1
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 8.3e-56 221.1 160 72.5
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 7.0e-55 218.0 165 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.7e-54 216.1 168 64.3
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 3.5e-54 215.7 137 77.4
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.0e-53 214.2 129 83.7
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 6.6e-53 211.5 175 63.4
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.5e-52 210.3 160 66.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.6e-51 206.8 136 72.1
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.8e-50 203.4 150 70.0
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.8e-50 203.4 186 60.8
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 1.5e-49 200.3 190 56.8
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 4.4e-49 198.7 140 70.0
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 3.5e-46 189.1 169 57.4
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.2e-43 180.6 172 60.5
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 4.1e-39 165.6 138 61.6
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 6.6e-37 158.3 125 64.0
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 1.5e-36 157.1 122 66.4
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 7.3e-36 154.8 122 63.9
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.6e-35 152.5 148 56.8
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 2.3e-34 149.8 122 62.3
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.2e-33 147.5 122 62.3
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 2.0e-33 146.7 112 67.9
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 2.9e-32 142.9 82 79.3
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 7.8e-30 134.8 103 64.1
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.9e-28 130.2 132 53.0
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 7.3e-28 128.3 166 45.8
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 1.4e-26 124.0 135 48.1
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 2.0e-25 120.2 115 60.0
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 3.4e-25 119.4 80 76.2
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 5.8e-25 118.6 109 58.7
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 7.6e-25 118.2 96 66.7
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.4e-23 114.0 102 63.7
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.9e-23 113.6 106 61.3
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 7.1e-23 111.7 91 69.2
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.2e-22 110.9 87 69.0
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-22 110.9 88 63.6
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 2.1e-22 110.2 82 64.6
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.7e-22 109.8 118 51.7
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 7.8e-22 108.2 104 64.4
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.0e-21 107.8 112 55.4
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.6e-21 105.1 93 62.4
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 5.6e-20 102.1 70 71.4
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.8e-19 99.8 68 77.9
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 3.6e-19 99.4 76 69.7
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.4e-18 97.4 58 84.5
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.2e-17 94.4 69 65.2
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.7e-16 90.5 143 46.2
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 3.8e-16 89.4 56 73.2
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 6.4e-16 88.6 98 57.1
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 3.0e-13 79.7 85 56.5
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 3.0e-13 79.7 130 40.0
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.9e-12 77.0 45 82.2
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 2.5e-12 76.6 63 65.1
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.8e-11 72.4 64 67.2
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 1.2e-09 67.8 106 44.3
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.5e-09 65.9 58 60.3
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.5e-09 65.9 146 36.3
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 9.9e-09 64.7 37 83.8
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.3e-08 64.3 44 72.7
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 1.4e-07 60.8 76 46.1
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 1.6e-06 57.4 112 33.9
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 1.6e-06 57.4 30 86.7
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 2.7e-06 56.6 30 86.7
Eucgr.L03680 Eucalyptus grandis HOM05D004245 ORTHO05D004783 4.6e-06 55.8 99 40.4


User provided reference genes

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