Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 8.3e-268 926.8 583 100.0
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.7e-124 450.7 586 51.7
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.1e-73 280.4 679 38.9
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 3.2e-70 270.4 358 47.5
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 8.0e-69 265.8 533 38.5
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.0e-64 251.1 642 35.2
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 7.7e-64 249.2 365 44.4
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 2.2e-63 247.7 440 41.4
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 6.5e-63 246.1 406 43.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 4.2e-62 243.4 642 37.9
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 5.5e-62 243.0 402 42.5
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 1.2e-61 241.9 420 41.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 3.6e-61 240.4 603 40.3
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.4e-60 238.4 414 41.3
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.0e-60 236.9 593 40.5
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 4.0e-60 236.9 593 40.5
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 6.8e-60 236.1 644 34.5
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.5e-59 235.0 243 56.8
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.7e-58 231.5 582 39.5
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 3.1e-57 227.3 258 51.6
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.6e-56 224.9 608 41.4
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.0e-55 222.2 425 39.5
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.8e-55 220.3 460 36.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.0e-55 219.9 435 37.7
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.2e-53 215.3 186 59.1
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.6e-53 214.9 587 41.2
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 3.0e-52 210.7 221 53.4
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 8.3e-50 202.6 598 37.5
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 2.4e-49 201.1 434 36.9
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.4e-49 199.9 420 36.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 1.2e-48 198.7 248 48.4
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 3.8e-47 193.7 404 38.4
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 1.9e-46 191.4 339 35.7
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-46 191.4 272 45.6
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.2e-45 188.7 345 39.4
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.6e-45 187.2 383 35.0
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 4.7e-45 186.8 440 35.7
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 1.4e-44 185.3 419 35.1
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 2.0e-43 181.4 440 34.3
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.6e-43 181.0 258 42.2
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.2e-42 177.9 336 38.7
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.9e-42 177.6 336 38.7
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 4.1e-41 173.7 439 33.7
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 4.1e-41 173.7 401 39.2
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.2e-40 172.2 449 33.0
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 4.6e-40 170.2 459 31.4
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 5.9e-40 169.9 303 38.3
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 7.8e-40 169.5 412 33.0
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.0e-39 169.1 422 34.8
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 3.0e-39 167.5 271 37.3
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.0e-39 166.8 414 34.1
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.1e-38 165.6 424 33.7
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.5e-38 165.2 273 41.8
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.5e-38 164.5 423 31.2
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 9.5e-38 162.5 430 29.8
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 8.0e-37 159.5 190 47.4
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.0e-37 159.5 433 30.0
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 1.0e-36 159.1 456 33.8
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.4e-36 158.7 268 40.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 8.9e-36 156.0 268 40.7
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.2e-35 155.6 287 40.8
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 7.5e-35 152.9 434 32.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 1.7e-34 151.8 465 31.2
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 7.0e-33 146.4 294 35.4
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.6e-32 145.2 224 45.1
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 4.6e-32 143.7 290 36.9
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.7e-31 141.7 429 31.5
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 6.6e-31 139.8 265 36.6
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.9e-30 138.3 229 38.4
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.9e-30 138.3 249 37.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 3.3e-30 137.5 184 42.4
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 4.3e-30 137.1 292 35.3
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 4.3e-30 137.1 410 30.7
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.1e-29 134.8 392 32.4
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 8.1e-29 132.9 426 31.7
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.1e-28 132.5 190 41.6
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.8e-28 131.7 257 37.0
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.8e-28 131.7 542 38.2
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.3e-28 131.3 263 33.5
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 4.0e-28 130.6 254 35.4
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.5e-27 128.6 376 33.8
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 2.0e-27 128.3 556 33.5
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 2.0e-27 128.3 252 37.7
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 2.6e-27 127.9 219 39.3
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 2.6e-27 127.9 240 36.7
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 3.4e-27 127.5 254 37.4
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 3.4e-27 127.5 219 39.3
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 3.4e-27 127.5 428 29.7
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 4.4e-27 127.1 242 37.2
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 4.4e-27 127.1 354 29.9
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.5e-27 126.3 266 33.5
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 2.2e-26 124.8 264 33.7
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 3.7e-26 124.0 242 37.6
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.9e-26 123.6 285 31.9
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 4.9e-26 123.6 182 39.6
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-25 122.5 376 33.2
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 2.4e-25 121.3 296 33.8
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 3.2e-25 120.9 296 33.8
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.2e-24 119.0 273 33.3
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.5e-24 117.5 216 35.2
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 7.8e-24 116.3 252 34.1
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.0e-23 114.4 251 36.7
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.9e-23 114.0 370 28.4
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 6.6e-23 113.2 186 39.2
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 5.6e-22 110.2 207 34.8
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 7.3e-22 109.8 283 32.9
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.2e-21 109.0 249 34.5
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.1e-21 108.2 234 35.5
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.6e-21 107.5 443 26.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 4.7e-21 107.1 377 30.5
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.8e-20 105.1 342 32.2
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 2.3e-20 104.8 445 25.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 4.0e-20 104.0 392 28.1
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.1e-16 91.7 390 27.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.3e-15 89.0 261 32.6
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.6e-13 82.0 289 27.7
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 6.2e-13 80.1 200 35.0
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 3.1e-12 77.8 121 39.7
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 9.0e-12 76.3 536 31.3
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 9.9e-11 72.8 514 32.7
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-10 72.4 117 36.8
FAN21G1377 Fragaria x ananassa HOM05D049070 ORTHO05D007526 1.0e-07 62.8 96 47.9
FAN21G3562 Fragaria x ananassa HOM05D049070 ORTHO05D007526 1.0e-07 62.8 96 47.9
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 3.0e-07 61.2 376 24.5
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 8.7e-07 59.7 126 33.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 8.7e-07 59.7 113 33.6
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-06 59.3 122 35.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.5e-06 58.2 129 34.9
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.5e-06 58.2 134 32.1
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.5e-06 58.2 191 27.7
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.3e-06 57.8 112 33.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 3.3e-06 57.8 115 30.4
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 3.3e-06 57.8 120 33.3
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 3.3e-06 57.8 101 38.6
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 3.3e-06 57.8 101 38.6
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 7.3e-06 56.6 159 25.8
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 9.6e-06 56.2 114 34.2
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 9.6e-06 56.2 139 29.5
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 9.6e-06 56.2 198 28.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 9.6e-06 56.2 128 32.8


User provided reference genes

Program Settings