Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1029300 Malus domestica HOM05D008807 ORTHO05D010580 1.4e-57 226.1 116 100.0
MD15G1024800 Malus domestica HOM05D008807 ORTHO05D010580 5.0e-47 191.0 118 82.2
Prupe.1G377200 Prunus persica HOM05D008807 ORTHO05D010580 1.8e-28 129.4 116 62.1
RcHm_v2.0_Chr6g0301311 Rosa chinensis HOM05D008807 ORTHO05D010580 8.5e-15 84.0 118 46.6
FAN20G0471 Fragaria x ananassa HOM05D008807 ORTHO05D010580 1.2e-13 80.1 116 45.7
FAN27G2218 Fragaria x ananassa HOM05D008807 ORTHO05D010580 1.6e-13 79.7 116 45.7
FAN15G1874 Fragaria x ananassa HOM05D008807 ORTHO05D010580 3.6e-13 78.6 116 44.8
Haze_17940 Corylus avellana HOM05D008807 ORTHO05D010580 3.0e-12 75.5 70 52.9
Thecc.08G029700 Theobroma cacao HOM05D008807 ORTHO05D010580 5.2e-12 74.7 51 70.6
Cfa018176 Carpinus fangiana HOM05D008807 ORTHO05D010580 1.5e-11 73.2 103 44.7
GSVIVG01009733001 Vitis vinifera HOM05D008807 ORTHO05D010580 2.8e-10 68.9 61 54.1
Gohir.D06G004700 Gossypium hirsutum HOM05D008807 ORTHO05D010580 3.7e-10 68.6 75 52.0
Gorai.010G009300 Gossypium raimondii HOM05D008807 ORTHO05D010580 3.7e-10 68.6 75 52.0
Haze_17942 Corylus avellana HOM05D008807 ORTHO05D010580 4.8e-10 68.2 99 42.4
Gohir.A06G009200 Gossypium hirsutum HOM05D008807 ORTHO05D010580 8.3e-10 67.4 51 64.7
Dinv36101 Davidia involucrata HOM05D010025 ORTHO05D010580 1.1e-09 67.0 53 58.5
Nn5g29649 Nelumbo nucifera HOM05D008807 ORTHO05D010580 1.4e-09 66.6 65 49.2
Dinv39435 Davidia involucrata HOM05D010025 ORTHO05D010580 2.4e-09 65.9 48 60.4
Potri.002G034300 Populus trichocarpa HOM05D008807 ORTHO05D010580 3.1e-09 65.5 81 48.1
Potri.005G228800 Populus trichocarpa HOM05D008807 ORTHO05D010580 3.1e-09 65.5 80 51.2
Manes.05G157800 Manihot esculenta HOM05D008807 ORTHO05D010580 4.1e-09 65.1 88 48.9
Actinidia22529 Actinidia chinensis HOM05D010025 ORTHO05D013126 7.0e-09 64.3 82 47.6
QL02p009078 Quercus lobata HOM05D008807 ORTHO05D010580 7.0e-09 64.3 67 50.7
CANSAT25G2084 Cannabis sativa HOM05D008807 ORTHO05D010580 1.6e-08 63.2 112 38.4
Ciclev10002762m.g Citrus clementina HOM05D008807 ORTHO05D010580 1.6e-08 63.2 81 45.7
Manes.18G022900 Manihot esculenta HOM05D008807 ORTHO05D010580 3.5e-08 62.0 101 41.6
Glyma.04G031000 Glycine max HOM05D014928 ORTHO05D010580 4.5e-08 61.6 88 50.0
Lsat_1_v5_gn_4_117741 Lactuca sativa HOM05D010025 ORTHO05D013126 4.5e-08 61.6 117 39.3
CSS0043815 Camellia sinensis var. sinensis HOM05D010025 ORTHO05D013126 7.7e-08 60.8 76 47.4
Aqoxy6G01147 Aquilegia oxysepala HOM05D008807 ORTHO05D010580 2.9e-07 58.9 74 43.2
Glyma.06G030800 Glycine max HOM05D014928 ORTHO05D010580 2.9e-07 58.9 51 60.8
Sabra05G0176700 Salix brachista HOM05D008807 ORTHO05D010580 2.9e-07 58.9 70 44.3
Cpa.g.sc123.50 Carica papaya HOM05D008807 ORTHO05D010580 3.8e-07 58.5 81 43.2
arahy.Tifrunner.gnm1.ann1.08WRUD Arachis hypogaea HOM05D001173 ORTHO05D010580 5.0e-07 58.2 87 48.3
arahy.Tifrunner.gnm1.ann1.KF8GDN Arachis hypogaea HOM05D014928 ORTHO05D010580 5.0e-07 58.2 87 48.3
Gorai.005G108400 Gossypium raimondii HOM05D008807 ORTHO05D010580 5.0e-07 58.2 55 58.2
Rhsim06G0030900 Rhododendron simsii HOM05D010025 ORTHO05D013126 6.6e-07 57.8 45 57.8
Lj1g0017273 Lotus japonicus HOM05D014928 ORTHO05D010580 1.1e-06 57.0 51 56.9
TAR625G0014 Trochodendron aralioides HOM05D008807 ORTHO05D010580 1.1e-06 57.0 53 54.7
Gohir.D02G095100 Gossypium hirsutum HOM05D008807 ORTHO05D010580 1.5e-06 56.6 55 56.4
ClCG08G014970 Citrullus lanatus HOM05D031554 ORTHO05D028892 1.9e-06 56.2 74 40.5
Rhsim06G0031600 Rhododendron simsii HOM05D010025 ORTHO05D013126 1.9e-06 56.2 80 43.8
VMungo1309G1535 Vigna mungo HOM05D014928 ORTHO05D010580 1.9e-06 56.2 50 60.0
Phvul.009G059100 Phaseolus vulgaris HOM05D014928 ORTHO05D010580 2.5e-06 55.8 117 37.6
CiPaw.15G081000 Carya illinoinensis HOM05D008807 ORTHO05D010580 3.3e-06 55.5 62 50.0
MELO3C030329.2 Cucumis melo HOM05D031554 ORTHO05D028892 3.3e-06 55.5 87 40.2
Lalb_Chr11g0062291 Lupinus albus HOM05D014928 ORTHO05D010580 3.3e-06 55.5 52 55.8
CsaV3_2G028810 Cucumis sativus L. HOM05D031554 ORTHO05D028892 4.2e-06 55.1 87 40.2
Gohir.A03G079200 Gossypium hirsutum HOM05D008807 ORTHO05D010580 4.2e-06 55.1 52 57.7
TWI56G1450 Tripterygium wilfordii HOM05D061360 ORTHO05D010580 4.2e-06 55.1 35 71.4
Cc10_g02650 Coffea canephora HOM05D010025 ORTHO05D013126 5.5e-06 54.7 55 49.1
MBI16_g07724_MAGBIO Magnolia biondii HOM05D008807 ORTHO05D010580 5.5e-06 54.7 50 52.0
TAR376G0370 Trochodendron aralioides HOM05D008807 ORTHO05D010580 7.2e-06 54.3 56 46.4


User provided reference genes

Program Settings