Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1016500 Malus domestica HOM05D007073 ORTHO05D008855 6.9e-57 223.8 116 100.0
MD15G1015600 Malus domestica HOM05D007073 ORTHO05D008855 1.6e-45 186.0 117 85.5
FvH4_5g30190 Fragaria vesca HOM05D007073 ORTHO05D008855 1.5e-43 179.5 116 81.9
RcHm_v2.0_Chr6g0272121 Rosa chinensis HOM05D007073 ORTHO05D008855 4.3e-43 177.9 116 81.9
RcHm_v2.0_Chr6g0302381 Rosa chinensis HOM05D007073 ORTHO05D008855 4.1e-41 171.4 116 80.2
CANSAT25G0010 Cannabis sativa HOM05D007073 ORTHO05D008855 5.9e-40 167.5 107 79.4
CSS0049768 Camellia sinensis var. sinensis HOM05D007073 ORTHO05D008855 1.7e-39 166.0 116 72.4
Haze_22602 Corylus avellana HOM05D000624 ORTHO05D000495 8.5e-39 163.7 107 79.4
RhsimUnG0148500 Rhododendron simsii HOM05D007073 ORTHO05D008855 1.9e-38 162.5 116 70.7
HanXRQChr02g0044001 Helianthus annuus HOM05D007073 ORTHO05D008855 2.5e-38 162.2 114 71.9
Atru.chr13.338 Acer truncatum HOM05D007073 ORTHO05D008855 4.2e-38 161.4 117 72.6
AUR62019145 Chenopodium quinoa HOM05D007073 ORTHO05D008855 9.4e-38 160.2 115 70.4
PGR031G0624 Punica granatum HOM05D007073 ORTHO05D008855 9.4e-38 160.2 112 73.2
Eucgr.L01253 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.2e-37 159.8 111 71.2
Eucgr.H01040 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.6e-37 159.5 111 70.3
TAR628G0116 Trochodendron aralioides HOM05D007073 ORTHO05D008855 2.7e-37 158.7 117 69.2
COL.COLO4_26179 Corchorus olitorius HOM05D007073 ORTHO05D008855 6.1e-37 157.5 114 70.2
QL02p010904 Quercus lobata HOM05D007073 ORTHO05D008855 7.9e-37 157.1 111 71.2
CANSAT11G0546 Cannabis sativa HOM05D007073 ORTHO05D008855 1.4e-36 156.4 111 71.2
Peaxi162Scf00287g01620 Petunia axillaris HOM05D007073 ORTHO05D008855 1.4e-36 156.4 111 69.4
GSVIVG01009840001 Vitis vinifera HOM05D007073 ORTHO05D008855 1.4e-36 156.4 117 67.5
PGSC0003DMG400003718 Solanum tuberosum HOM05D007073 ORTHO05D008855 1.8e-36 156.0 111 70.3
Lj4g0003370 Lotus japonicus HOM05D007073 ORTHO05D008855 2.3e-36 155.6 111 70.3
TWI56G0686 Tripterygium wilfordii HOM05D007073 ORTHO05D008855 2.3e-36 155.6 113 69.9
vmacro21707 Vaccinium macrocarpon HOM05D007073 ORTHO05D008855 3.9e-36 154.8 116 67.2
Dinv31819 Davidia involucrata HOM05D007073 ORTHO05D008855 5.1e-36 154.5 112 70.5
Solyc04g081160.3 Solanum lycopersicum HOM05D007073 ORTHO05D008855 5.1e-36 154.5 111 69.4
Sopen04g034780 Solanum pennellii HOM05D007073 ORTHO05D008855 5.1e-36 154.5 111 69.4
Lsat_1_v5_gn_1_16141 Lactuca sativa HOM05D007073 ORTHO05D008855 8.8e-36 153.7 114 70.2
Hma1.2p1_0773F.1_g216240 Hydrangea macrophylla HOM05D007073 ORTHO05D008855 1.1e-35 153.3 112 69.6
ECA247G1834 Erigeron canadensis HOM05D007073 ORTHO05D008855 2.0e-35 152.5 110 70.9
SalBow7G2056 Salvia bowleyana HOM05D007073 ORTHO05D008855 2.0e-35 152.5 112 69.6
EL10Ac1g00450 Beta vulgaris HOM05D007073 ORTHO05D008855 3.3e-35 151.8 115 66.1
Migut.C00802 Erythranthe guttata HOM05D007073 ORTHO05D008855 3.3e-35 151.8 112 70.5
Potri.005G235800 Populus trichocarpa HOM05D007073 ORTHO05D008855 4.4e-35 151.4 116 66.4
Sabra05G0182000 Salix brachista HOM05D007073 ORTHO05D008855 4.4e-35 151.4 111 67.6
SGA_v2.0_scaffold92G28274 Striga asiatica HOM05D007073 ORTHO05D008855 4.4e-35 151.4 112 67.0
CANSAT11G2499 Cannabis sativa HOM05D007073 ORTHO05D008855 9.7e-35 150.2 105 72.4
unitig_32.g11146 Utricularia gibba HOM05D007073 ORTHO05D008855 9.7e-35 150.2 111 69.4
Glyma.08G113800 Glycine max HOM05D007073 ORTHO05D008855 1.7e-34 149.4 117 66.7
Psat7g072280 Pisum sativum HOM05D007073 ORTHO05D008855 1.7e-34 149.4 110 69.1
PSO675G5408 Papaver somniferum HOM05D007073 ORTHO05D008855 2.2e-34 149.1 110 70.0
PSO541G6379 Papaver somniferum HOM05D007073 ORTHO05D008855 3.7e-34 148.3 110 70.0
Sc26g0003150 Simmondsia chinensis HOM05D007073 ORTHO05D008855 3.7e-34 148.3 115 64.3
arahy.Tifrunner.gnm1.ann1.0LW32C Arachis hypogaea HOM05D007073 ORTHO05D008855 4.8e-34 147.9 111 65.8
TPR.G24371 Trifolium pratense HOM05D007073 ORTHO05D008855 4.8e-34 147.9 111 68.5
Zm00001eb001980 Zea mays HOM05D007073 ORTHO05D008855 6.3e-34 147.5 114 66.7
Oeu054729.1 Olea europaea HOM05D007073 ORTHO05D008855 8.2e-34 147.1 114 65.8
Sp1g26740 Schrenkiella parvula HOM05D007073 ORTHO05D008855 8.2e-34 147.1 116 62.9
CAN.G1271.5 Capsicum annuum HOM05D007073 ORTHO05D008855 1.1e-33 146.7 111 66.7
Duzib093G1738 Durio zibethinus HOM05D007073 ORTHO05D008855 1.1e-33 146.7 112 66.1
Medtr8g085700 Medicago truncatula HOM05D007073 ORTHO05D008855 1.4e-33 146.4 112 67.9
Nn5g29254 Nelumbo nucifera HOM05D007073 ORTHO05D008855 1.8e-33 146.0 117 66.7
MSTRG.1215 Avicennia marina HOM05D007073 ORTHO05D008855 2.4e-33 145.6 110 65.5
Manes.18G016450 Manihot esculenta HOM05D007073 ORTHO05D008855 2.4e-33 145.6 116 62.9
SGA_v2.0_scaffold92G28275 Striga asiatica HOM05D007073 ORTHO05D008855 2.4e-33 145.6 110 66.4
Carub.0001s2918 Capsella rubella HOM05D007073 ORTHO05D008855 3.1e-33 145.2 116 62.9
CARHR030330 Cardamine hirsuta HOM05D007073 ORTHO05D008855 3.1e-33 145.2 116 62.9
Cc04_g14740 Coffea canephora HOM05D007073 ORTHO05D008855 4.1e-33 144.8 111 66.7
VMungo0251G2135 Vigna mungo HOM05D007073 ORTHO05D008855 4.1e-33 144.8 111 65.8
Ca_17949_v3 Cicer arietinum L. HOM05D007073 ORTHO05D008855 5.3e-33 144.4 116 62.9
CsaV3_2G029360 Cucumis sativus L. HOM05D007073 ORTHO05D008855 5.3e-33 144.4 116 63.8
Rhsim06G0025500 Rhododendron simsii HOM05D000624 ORTHO05D000495 7.0e-33 144.1 103 70.9
Sed0011824 Sechium edule HOM05D007073 ORTHO05D008855 7.0e-33 144.1 111 64.9
Lalb_Chr12g0205331 Lupinus albus HOM05D007073 ORTHO05D008855 1.2e-32 143.3 113 66.4
Thhalv10009135m.g Eutrema salsugineum HOM05D007073 ORTHO05D008855 1.5e-32 142.9 116 61.2
A09p35370 Brassica napus HOM05D007073 ORTHO05D008855 2.0e-32 142.5 116 61.2
Zm00001eb403590 Zea mays HOM05D007073 ORTHO05D008855 2.6e-32 142.1 110 64.5
Aa31LG6G9870 Aethionema arabicum HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 62.9
BcaC05g27117 Brassica carinata HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 61.2
BcaC05g27119 Brassica carinata HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 61.2
C05p29970 Brassica napus HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 61.2
BolC5t31732H Brassica oleracea HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 61.2
BolC5t31736H Brassica oleracea HOM05D007073 ORTHO05D008855 3.5e-32 141.7 116 61.2
ClCG08G014440 Citrullus lanatus HOM05D007073 ORTHO05D008855 3.5e-32 141.7 118 61.9
Phvul.002G236200 Phaseolus vulgaris HOM05D007073 ORTHO05D008855 4.5e-32 141.4 111 64.9
CDE08G0828 Ceratophyllum demersum HOM05D007073 ORTHO05D008855 5.9e-32 141.0 116 59.5
Cc02_g29940 Coffea canephora HOM05D007073 ORTHO05D008855 1.0e-31 140.2 111 64.0
THA.LOC104810648 Tarenaya hassleriana HOM05D007073 ORTHO05D008855 1.0e-31 140.2 110 67.3
Glyma.05G155900 Glycine max HOM05D007073 ORTHO05D008855 2.9e-31 138.7 107 64.5
FAN13G2867 Fragaria x ananassa HOM05D007073 ORTHO05D008855 3.8e-31 138.3 92 81.5
arahy.Tifrunner.gnm1.ann1.F1G2D9 Arachis hypogaea HOM05D007073 ORTHO05D008855 5.0e-31 137.9 134 54.5
BcaB07g32745 Brassica carinata HOM05D007073 ORTHO05D008855 8.5e-31 137.1 114 60.5
HPP92_025607 Vanilla planifolia HOM05D007073 ORTHO05D008855 1.1e-30 136.7 106 63.2
AT1G30845 Arabidopsis thaliana HOM05D007073 ORTHO05D008855 1.5e-30 136.3 112 63.4
FAN18G2174 Fragaria x ananassa HOM05D007403 ORTHO05D009306 1.5e-30 136.3 88 83.0
MD13G1087600 Malus domestica HOM05D007073 ORTHO05D008855 1.2e-29 133.3 79 88.6
Prupe.1G369500 Prunus persica HOM05D007073 ORTHO05D008855 2.3e-28 129.0 83 80.7
ATR0945G003 Amborella trichopoda HOM05D007073 ORTHO05D008855 6.7e-28 127.5 108 61.1
Cfa013916 Carpinus fangiana HOM05D007073 ORTHO05D008855 2.6e-27 125.6 83 78.3
C05p29960 Brassica napus HOM05D007073 ORTHO05D008855 4.8e-26 121.3 99 61.6
CiPaw.07G153100 Carya illinoinensis HOM05D007073 ORTHO05D008855 6.3e-26 120.9 82 72.0
AUR62014408 Chenopodium quinoa HOM05D007073 ORTHO05D008855 4.1e-25 118.2 87 69.0
SEGI_10735 Sequoiadendron giganteum HOM05D007073 ORTHO05D008855 7.0e-25 117.5 116 55.2
Peaxi162Scf01591g00005 Petunia axillaris HOM05D007073 ORTHO05D008855 1.6e-24 116.3 80 70.0
Gohir.A01G112900 Gossypium hirsutum HOM05D007073 ORTHO05D008855 2.0e-24 115.9 86 70.9
Thecc.08G038900 Theobroma cacao HOM05D007073 ORTHO05D008855 2.0e-24 115.9 82 70.7
Gohir.D01G101000 Gossypium hirsutum HOM05D007073 ORTHO05D008855 5.9e-24 114.4 86 68.6
Aqoxy6G02335_Aqoxy6G02336 Aquilegia oxysepala HOM05D000558 ORTHO05D001857 7.7e-24 114.0 89 66.3
AL1G45120 Arabidopsis lyrata HOM05D007073 ORTHO05D008855 7.7e-24 114.0 175 41.1
Os03g0127000 Oryza sativa ssp. japonica HOM05D007073 ORTHO05D008855 7.7e-24 114.0 82 68.3
Ciclev10002853m.g Citrus clementina HOM05D007073 ORTHO05D008855 1.3e-23 113.2 105 59.0
Eucgr.H01037 Eucalyptus grandis HOM05D007073 ORTHO05D008855 1.3e-23 113.2 79 70.9
Actinidia26593 Actinidia chinensis HOM05D007073 ORTHO05D008855 6.5e-23 110.9 96 62.5
Nitab4.5_0005185g0010 Nicotiana tabacum HOM05D007073 ORTHO05D008855 8.5e-23 110.5 79 69.6
Actinidia37317 Actinidia chinensis HOM05D007073 ORTHO05D008855 2.5e-22 109.0 84 63.1
MELO3C010995.2 Cucumis melo HOM05D007073 ORTHO05D008855 1.4e-20 103.2 86 62.8
DCAR_017499 Daucus carota HOM05D007073 ORTHO05D008855 7.5e-19 97.4 64 79.7
Mapoly0121s0038 Marchantia polymorpha HOM05D007073 ORTHO05D008855 2.2e-18 95.9 108 48.1
C05p30020 Brassica napus HOM05D007073 ORTHO05D008855 2.0e-16 89.4 81 54.3
FAN04G0335 Fragaria x ananassa HOM05D007403 ORTHO05D009306 5.9e-16 87.8 51 84.3
Eucgr.L01259 Eucalyptus grandis HOM05D007073 ORTHO05D008855 8.5e-15 84.0 54 72.2
arahy.Tifrunner.gnm1.ann1.JR36LC Arachis hypogaea HOM05D007073 ORTHO05D008855 1.9e-14 82.8 52 73.1
Pp3c8_14860 Physcomitrium patens HOM05D007073 ORTHO05D008855 9.4e-14 80.5 108 46.3
BolC5t31739H Brassica oleracea HOM05D007073 ORTHO05D008855 2.1e-13 79.3 68 55.9
AagrBONN_evm.TU.Sc2ySwM_344.4448 Anthoceros agrestis HOM05D007073 ORTHO05D008855 1.2e-11 73.6 77 46.8
Actinidia04603 Actinidia chinensis HOM05D007073 ORTHO05D008855 5.4e-09 64.7 59 55.9


User provided reference genes

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