Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 1.4e-159 566.2 282 100.0
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.6e-155 552.7 282 97.2
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 4.3e-145 518.1 286 89.9
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.3e-141 506.5 271 91.1
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.1e-139 499.2 271 90.0
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 2.7e-139 498.8 271 90.0
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.5e-139 498.4 271 90.0
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 4.6e-139 498.0 271 90.4
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.1e-132 476.9 276 83.3
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 1.0e-130 470.3 284 80.3
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.8e-130 469.5 276 82.2
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.0e-130 468.8 281 81.5
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.1e-129 466.8 271 81.9
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.5e-129 466.5 276 82.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.5e-129 466.5 276 79.3
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.9e-129 466.1 270 83.0
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 4.3e-129 464.9 286 78.7
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 4.3e-129 464.9 270 83.0
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 4.3e-129 464.9 271 82.3
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 9.6e-129 463.8 278 80.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 81.5
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.1e-128 462.6 275 80.7
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 2.1e-128 462.6 270 81.1
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 2.1e-128 462.6 270 81.1
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 2.8e-128 462.2 271 80.8
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.7e-128 461.8 270 80.7
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 6.2e-128 461.1 277 80.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 6.2e-128 461.1 277 80.1
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 6.2e-128 461.1 271 81.2
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 6.2e-128 461.1 276 78.6
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 8.2e-128 460.7 274 80.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.1e-127 460.3 271 80.4
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 1.1e-127 460.3 277 79.1
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.4e-127 459.9 270 80.0
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.8e-127 459.5 277 80.1
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 81.2
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.8e-127 459.5 276 79.0
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 79.7
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.8e-127 459.5 271 80.4
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 2.4e-127 459.1 273 81.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 2.4e-127 459.1 270 81.9
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.1e-127 458.8 276 78.6
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 4.0e-127 458.4 271 79.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 5.3e-127 458.0 275 80.4
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 9.0e-127 457.2 272 80.1
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 9.0e-127 457.2 271 80.1
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 1.2e-126 456.8 277 79.8
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 1.2e-126 456.8 270 80.0
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.2e-126 456.8 277 79.1
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.5e-126 456.4 276 78.6
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 2.0e-126 456.1 277 79.1
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 79.6
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 79.7
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 4.5e-126 454.9 271 79.0
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 5.8e-126 454.5 271 80.4
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 7.6e-126 454.1 269 79.9
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 1.0e-125 453.8 271 79.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.3e-125 453.4 273 80.2
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.8e-125 451.8 270 80.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.8e-125 451.8 271 79.3
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 3.8e-125 451.8 271 79.0
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.5e-125 451.1 277 78.3
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 8.4e-125 450.7 277 78.3
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.1e-124 450.3 273 78.8
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 1.1e-124 450.3 276 76.4
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-124 449.9 270 79.6
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-124 449.9 270 79.6
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 1.4e-124 449.9 271 77.1
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 5.5e-124 448.0 271 77.9
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 9.3e-124 447.2 271 78.6
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 9.3e-124 447.2 271 77.1
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 3.5e-123 445.3 273 77.7
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 7.9e-123 444.1 271 78.2
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.3e-121 438.7 308 71.8
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.7e-121 437.2 270 77.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 1.3e-120 436.8 270 76.3
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.8e-120 435.6 271 76.0
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 6.3e-120 434.5 271 76.0
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 8.2e-120 434.1 271 76.0
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.4e-119 432.6 270 76.7
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 4.1e-119 431.8 257 80.2
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 9.0e-119 430.6 306 70.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 9.0e-119 430.6 270 74.4
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.2e-118 430.3 262 77.5
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.6e-118 429.1 271 76.0
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.3e-117 426.8 270 75.2
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.9e-117 425.6 274 75.9
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 8.5e-117 424.1 271 73.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 5.5e-116 421.4 277 74.7
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 1.2e-115 420.2 270 72.6
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.6e-115 419.9 276 72.5
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 6.1e-115 417.9 301 68.1
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 6.7e-114 414.5 271 70.1
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.0e-113 412.9 261 74.3
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 4.3e-113 411.8 273 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.7e-113 410.6 273 68.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 9.7e-113 410.6 288 70.1
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 6.3e-112 407.9 273 67.8
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.4e-111 406.8 381 57.2
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.8e-111 406.4 276 72.1
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.5e-110 403.3 271 76.8
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.1e-108 397.1 270 71.9
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 7.9e-107 391.0 241 75.5
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 3.7e-104 382.1 245 75.1
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 1.1e-103 380.6 271 64.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 7.0e-103 377.9 226 80.5
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.5e-102 375.6 244 72.1
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 5.5e-100 368.2 230 77.4
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 6.7e-98 361.3 251 71.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.7e-96 356.7 275 61.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.0e-93 347.4 271 62.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 2.7e-91 339.3 221 73.8
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 8.0e-91 337.8 196 83.2
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 6.8e-90 334.7 277 62.5
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 7.5e-89 331.3 277 62.1
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 9.8e-89 330.9 276 57.2
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 2.8e-88 329.3 277 61.7
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 2.7e-86 322.8 288 56.6
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.2e-81 307.4 277 58.8
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 2.8e-80 302.8 186 75.3
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 5.6e-76 288.5 277 56.3
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 5.6e-76 288.5 276 51.1
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.3e-72 277.3 250 57.2
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.4e-71 273.1 168 76.8
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.4e-66 257.3 160 73.8
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.7e-64 249.2 152 78.3
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 1.4e-63 247.3 165 72.7
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.1e-58 231.1 209 58.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.2e-54 217.6 159 68.6
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.5e-52 209.9 277 45.8
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 8.9e-50 201.4 281 43.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.7e-46 189.9 274 44.5
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 1.6e-43 180.6 142 66.2
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.9e-36 157.1 148 60.8
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 3.6e-35 152.9 96 74.0
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.8e-34 150.6 261 42.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.0e-33 147.1 269 40.5
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.2e-31 139.8 216 42.1
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 2.3e-29 133.7 261 39.5
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.4e-28 128.6 92 68.5
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.1e-26 123.2 79 67.1
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 5.3e-26 122.5 140 44.3
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 4.5e-25 119.4 140 43.6
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.1e-18 96.7 73 61.6
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 2.9e-16 90.1 56 69.6
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 9.6e-12 75.1 92 45.7
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 9.6e-12 75.1 45 75.6
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 3.4e-09 66.6 49 59.2


User provided reference genes

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