Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 2.6e-71 271.9 136 100.0
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 4.5e-31 138.3 128 57.0
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 2.7e-28 129.0 140 52.9
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.9e-26 122.9 139 46.8
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 2.8e-25 119.0 140 41.4
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 3.1e-24 115.5 149 45.6
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 6.9e-24 114.4 139 42.4
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 1.5e-23 113.2 139 41.7
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 4.5e-23 111.7 136 46.3
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 3.8e-22 108.6 138 42.8
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.4e-21 106.7 139 39.6
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 1.4e-21 106.7 132 42.4
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 2.5e-21 105.9 131 42.7
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 2.5e-21 105.9 132 42.4
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 3.2e-21 105.5 135 45.2
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 9.4e-21 104.0 139 43.2
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 9.4e-21 104.0 138 45.7
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.2e-20 103.6 138 42.8
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 1.2e-20 103.6 138 44.2
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 1.2e-20 103.6 134 42.5
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 1.6e-20 103.2 138 42.8
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 2.1e-20 102.8 128 41.4
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.6e-20 102.1 139 40.3
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 4.6e-20 101.7 147 41.5
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 4.6e-20 101.7 135 40.0
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 6.1e-20 101.3 135 43.7
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 6.1e-20 101.3 132 40.9
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 7.9e-20 100.9 130 40.8
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 7.9e-20 100.9 141 39.7
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.0e-19 100.5 135 43.7
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.0e-19 100.5 135 43.7
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 1.8e-19 99.8 138 40.6
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 2.3e-19 99.4 138 43.5
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 2.3e-19 99.4 141 41.1
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.0e-19 99.0 137 39.4
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.9e-19 98.6 131 38.2
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 8.8e-19 97.4 136 38.2
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 8.8e-19 97.4 139 38.8
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 8.8e-19 97.4 135 38.5
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.1e-18 97.1 138 42.0
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 1.1e-18 97.1 135 43.7
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.5e-18 96.7 124 43.5
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.5e-18 95.9 136 37.5
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 2.5e-18 95.9 146 39.0
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 3.3e-18 95.5 135 38.5
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 3.3e-18 95.5 135 37.8
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 3.3e-18 95.5 135 41.5
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 4.3e-18 95.1 135 40.7
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 4.3e-18 95.1 135 40.7
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 7.4e-18 94.4 128 35.9
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 9.7e-18 94.0 145 39.3
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 9.7e-18 94.0 140 36.4
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 1.3e-17 93.6 132 41.7
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 1.3e-17 93.6 131 40.5
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.3e-17 93.6 128 35.9
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.7e-17 93.2 131 40.5
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 2.8e-17 92.4 137 35.8
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 3.7e-17 92.0 137 39.4
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 3.7e-17 92.0 138 38.4
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 4.8e-17 91.7 133 37.6
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 4.8e-17 91.7 133 37.6
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 6.3e-17 91.3 128 37.5
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 8.2e-17 90.9 144 35.4
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.1e-16 90.5 133 36.8
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 1.4e-16 90.1 133 40.6
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 3.1e-16 89.0 134 38.8
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 3.1e-16 89.0 137 36.5
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.1e-16 89.0 135 37.8
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.9e-16 87.8 137 35.8
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 9.1e-16 87.4 139 38.8
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 9.1e-16 87.4 141 33.3
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 9.1e-16 87.4 137 35.8
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 9.1e-16 87.4 138 39.1
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.5e-15 85.1 134 39.6
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 1.9e-13 79.7 125 40.0
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 2.5e-13 79.3 134 36.6
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.5e-13 79.3 134 37.3
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 2.5e-13 79.3 142 36.6
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 3.2e-13 79.0 119 42.0
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.2e-13 78.6 134 38.8
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 7.2e-13 77.8 116 35.3
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 9.4e-13 77.4 119 37.8
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 1.2e-12 77.0 116 36.2
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 1.6e-12 76.6 127 37.8
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 1.6e-12 76.6 120 39.2
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 3.6e-12 75.5 131 36.6
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 3.6e-12 75.5 132 41.7
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 4.7e-12 75.1 131 37.4
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 4.7e-12 75.1 112 34.8
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 4.7e-12 75.1 127 34.6
ClCG02G011420 Citrullus lanatus HOM05D005726 ORTHO05D001733 1.0e-11 73.9 126 36.5
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 1.0e-11 73.9 128 35.2
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 3.9e-11 72.0 117 35.9
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 3.9e-11 72.0 130 35.4
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 6.7e-11 71.2 117 39.3
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 1.5e-10 70.1 116 31.9
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 3.3e-10 68.9 110 40.0
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 4.4e-10 68.6 119 33.6
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 5.7e-10 68.2 123 33.3
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 7.4e-10 67.8 111 41.4
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 1.3e-09 67.0 122 35.2
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 1.7e-09 66.6 118 42.4
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 1.7e-09 66.6 118 42.4
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 2.2e-09 66.2 131 32.1
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.8e-09 65.9 118 38.1
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 2.8e-09 65.9 111 33.3
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 3.7e-09 65.5 118 41.5
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 3.7e-09 65.5 118 41.5
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 4.8e-09 65.1 118 41.5
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 4.8e-09 65.1 87 40.2
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 6.3e-09 64.7 110 39.1
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 1.4e-08 63.5 131 31.3
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.4e-08 63.5 122 32.0
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 1.4e-08 63.5 104 32.7
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 1.8e-08 63.2 104 32.7
Medtr3g117720 Medicago truncatula HOM05D005726 ORTHO05D001733 1.8e-08 63.2 68 45.6
SalBow8G4445 Salvia bowleyana HOM05D005726 ORTHO05D001733 1.8e-08 63.2 134 35.1
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 2.4e-08 62.8 104 35.6
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.4e-08 62.8 106 34.9
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 2.4e-08 62.8 105 34.3
RcHm_v2.0_Chr5g0081431 Rosa chinensis HOM05D003064 ORTHO05D001733 2.4e-08 62.8 108 31.5
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 2.4e-08 62.8 104 35.6
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 4.1e-08 62.0 73 45.2
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 4.1e-08 62.0 116 33.6
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 5.3e-08 61.6 104 33.7
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 5.3e-08 61.6 106 32.1
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 5.3e-08 61.6 104 33.7
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 5.3e-08 61.6 104 34.6
BcaB08g34968 Brassica carinata HOM05D007714 ORTHO05D009659 7.0e-08 61.2 115 33.0
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.0e-08 61.2 107 31.8
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.0e-08 61.2 106 32.1
THA.LOC104824780 Tarenaya hassleriana HOM05D007714 ORTHO05D009659 7.0e-08 61.2 109 33.0
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 9.1e-08 60.8 111 36.0
Sc15g0004980 Simmondsia chinensis HOM05D003064 ORTHO05D001733 9.1e-08 60.8 119 31.9
Zm00001eb210440 Zea mays HOM05D005726 ORTHO05D001733 9.1e-08 60.8 135 27.4
BcaC07g41170 Brassica carinata HOM05D007714 ORTHO05D009659 1.2e-07 60.5 115 33.0
C08p41770 Brassica napus HOM05D007714 ORTHO05D009659 1.2e-07 60.5 115 33.0
BraA09t41234Z Brassica rapa HOM05D007714 ORTHO05D009659 1.2e-07 60.5 115 33.0
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 1.2e-07 60.5 108 34.3
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.2e-07 60.5 106 31.1
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-07 60.5 111 31.5
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.2e-07 60.5 111 31.5
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.2e-07 60.5 111 31.5
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 1.2e-07 60.5 104 35.6
BolC8t51740H Brassica oleracea HOM05D007714 ORTHO05D009659 1.5e-07 60.1 115 33.0
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.5e-07 60.1 105 33.3
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 1.5e-07 60.1 104 32.7
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 1.5e-07 60.1 117 34.2
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 1.5e-07 60.1 104 34.6
A09p58470 Brassica napus HOM05D007714 ORTHO05D009659 2.0e-07 59.7 115 32.2
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 2.0e-07 59.7 127 29.9
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 2.6e-07 59.3 112 35.7
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 2.6e-07 59.3 111 34.2
PGR119G0056 Punica granatum HOM05D003064 ORTHO05D001733 2.6e-07 59.3 96 34.4
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 4.5e-07 58.5 114 34.2
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 4.5e-07 58.5 108 30.6
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 4.5e-07 58.5 112 36.6
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 5.9e-07 58.2 108 30.6
Psat7g092800 Pisum sativum HOM05D018548 ORTHO05D020752 5.9e-07 58.2 115 36.5
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.7e-07 57.8 108 30.6
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 1.0e-06 57.4 116 31.0
Carub.0004s0020 Capsella rubella HOM05D007714 ORTHO05D009659 1.7e-06 56.6 118 30.5
HanXRQChr16g0520931 Helianthus annuus HOM05D003064 ORTHO05D001733 1.7e-06 56.6 111 34.2
Medtr5g084250 Medicago truncatula HOM05D003064 ORTHO05D001733 1.7e-06 56.6 104 32.7
ATR1042G001 Amborella trichopoda HOM05D003064 ORTHO05D009659 2.2e-06 56.2 114 30.7
PSO478G3040 Papaver somniferum HOM05D003064 ORTHO05D001733 2.2e-06 56.2 133 24.1
SGA_v2.0_scaffold390G50608 Striga asiatica HOM05D005726 ORTHO05D001733 3.8e-06 55.5 130 31.5
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 5.0e-06 55.1 106 32.1
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 5.0e-06 55.1 106 32.1
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 6.5e-06 54.7 95 31.6
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 6.5e-06 54.7 104 30.8
AL4G10270 Arabidopsis lyrata HOM05D007714 ORTHO05D009659 8.5e-06 54.3 116 31.9
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 8.5e-06 54.3 111 34.2
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 8.5e-06 54.3 108 30.6


User provided reference genes

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