Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 5.1e-38 160.6 82 100.0
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 8.1e-36 153.3 82 96.3
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 1.9e-32 142.1 81 90.1
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 7.3e-29 130.2 81 80.2
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 7.3e-29 130.2 81 80.2
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.1e-27 126.3 81 77.8
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.8e-27 125.6 81 77.8
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 6.9e-27 123.6 81 75.3
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 4.5e-26 120.9 78 75.6
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 5.8e-26 120.6 81 74.1
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 5.8e-26 120.6 82 74.4
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 7.6e-26 120.2 81 74.1
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 9.9e-26 119.8 82 74.4
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 2.2e-25 118.6 82 70.7
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 2.2e-25 118.6 81 72.8
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.9e-25 118.2 79 75.9
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 2.9e-25 118.2 81 74.1
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 3.8e-25 117.9 77 75.3
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 4.9e-25 117.5 82 73.2
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 8.4e-25 116.7 82 69.5
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 8.4e-25 116.7 82 73.2
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 8.4e-25 116.7 78 73.1
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 8.4e-25 116.7 78 75.6
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 1.1e-24 116.3 79 73.4
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 1.1e-24 116.3 82 69.5
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 1.1e-24 116.3 78 73.1
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 1.4e-24 115.9 78 74.4
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 1.4e-24 115.9 82 70.7
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 1.4e-24 115.9 77 74.0
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 1.4e-24 115.9 82 70.7
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 1.9e-24 115.5 82 69.5
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 1.9e-24 115.5 76 76.3
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 1.9e-24 115.5 81 74.1
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 2.4e-24 115.2 78 71.8
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 4.2e-24 114.4 78 71.8
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 4.2e-24 114.4 82 72.0
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 4.2e-24 114.4 79 70.9
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 4.2e-24 114.4 81 69.1
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 4.2e-24 114.4 82 72.0
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 5.4e-24 114.0 82 72.0
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 5.4e-24 114.0 82 72.0
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 7.1e-24 113.6 82 72.0
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 7.1e-24 113.6 77 71.4
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 7.1e-24 113.6 82 70.7
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 9.3e-24 113.2 82 68.3
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 9.3e-24 113.2 82 68.3
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 9.3e-24 113.2 82 68.3
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 9.3e-24 113.2 79 69.6
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 1.6e-23 112.5 78 70.5
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 1.6e-23 112.5 78 69.2
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 1.6e-23 112.5 81 71.6
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 2.1e-23 112.1 82 72.0
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 2.7e-23 111.7 82 68.3
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 2.7e-23 111.7 80 70.0
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 2.7e-23 111.7 82 64.6
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 2.7e-23 111.7 75 74.7
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 3.5e-23 111.3 79 72.2
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 4.6e-23 110.9 82 64.6
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 4.6e-23 110.9 81 69.1
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 6.0e-23 110.5 78 67.9
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 7.9e-23 110.2 78 67.9
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 1.0e-22 109.8 80 66.2
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.0e-22 109.8 73 74.0
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 1.3e-22 109.4 80 70.0
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.3e-22 109.4 82 65.9
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.8e-22 109.0 80 70.0
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.3e-22 108.6 77 71.4
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 3.0e-22 108.2 77 71.4
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 3.0e-22 108.2 77 71.4
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 3.9e-22 107.8 81 69.1
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 3.9e-22 107.8 82 65.9
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 5.1e-22 107.5 80 68.8
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 5.1e-22 107.5 77 70.1
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 5.1e-22 107.5 81 65.4
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 5.1e-22 107.5 82 65.9
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 5.1e-22 107.5 81 66.7
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 8.7e-22 106.7 82 65.9
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 7.4e-21 103.6 80 67.5
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 7.4e-21 103.6 75 68.0
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 2.8e-20 101.7 75 66.7
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 4.0e-19 97.8 66 72.7
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 2.0e-18 95.5 82 61.0
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 2.0e-18 95.5 66 71.2
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 4.5e-18 94.4 80 61.2
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 4.9e-17 90.9 73 60.3
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 4.9e-17 90.9 61 72.1
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 3.5e-15 84.7 80 53.8
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 7.9e-15 83.6 70 58.6
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 5.1e-14 80.9 60 65.0
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.9e-13 79.0 134 40.3
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 2.5e-13 78.6 76 52.6
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 4.3e-13 77.8 77 55.8
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 2.2e-09 65.5 53 62.3
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 2.2e-09 65.5 53 62.3
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 2.2e-09 65.5 46 65.2
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 6.5e-09 63.9 44 70.5
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 1.9e-08 62.4 45 62.2
MCO07G444 Micromonas commoda HOM05D007648 ORTHO05D009613 2.5e-08 62.0 72 48.6
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 3.2e-08 61.6 39 74.4
BcaC03g17585 Brassica carinata HOM05D007648 ORTHO05D009613 3.5e-07 58.2 80 46.2
Cre14.g626667 Chlamydomonas reinhardtii HOM05D007648 ORTHO05D009613 2.3e-06 55.5 80 43.8


User provided reference genes

Program Settings