Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 6.5e-100 367.5 195 100.0
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 1.0e-89 333.6 195 91.3
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.5e-75 286.6 197 81.2
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-56 223.4 195 68.2
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 3.7e-55 218.8 206 64.6
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.4e-55 218.0 195 67.2
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.4e-54 216.9 196 67.9
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.0e-54 214.5 196 67.3
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 7.8e-53 211.1 208 63.5
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.5e-51 206.8 209 62.2
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 2.1e-50 203.0 200 63.0
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.7e-50 201.8 193 63.2
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.1e-49 200.7 211 61.1
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.4e-49 200.3 207 63.8
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.1e-49 199.1 207 63.3
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 4.0e-49 198.7 204 61.8
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 6.8e-49 198.0 204 61.8
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.5e-48 196.8 207 61.8
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 2.0e-48 196.4 200 62.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 2.0e-48 196.4 198 60.6
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 3.4e-48 195.7 199 59.8
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 4.4e-48 195.3 194 61.3
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 5.8e-48 194.9 191 61.8
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.7e-47 193.4 205 59.5
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 2.2e-47 193.0 192 60.9
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 4.9e-47 191.8 183 61.7
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 6.4e-47 191.4 183 61.7
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 6.4e-47 191.4 195 61.5
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.1e-46 188.0 196 60.7
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.7e-45 186.0 198 59.1
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 3.5e-45 185.7 187 57.8
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 3.5e-45 185.7 200 62.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 7.8e-45 184.5 194 60.3
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.3e-44 183.7 195 57.4
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.7e-44 183.3 183 62.8
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 3.0e-44 182.6 195 60.0
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 5.1e-44 181.8 187 57.8
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 6.6e-44 181.4 183 60.7
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 8.6e-44 181.0 187 57.2
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.1e-43 180.6 195 59.5
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.9e-43 179.9 197 57.9
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.9e-43 179.9 198 58.6
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 2.5e-43 179.5 196 59.7
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 4.3e-43 178.7 252 50.0
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 5.6e-43 178.3 197 59.4
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 9.5e-43 177.6 201 58.7
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.6e-42 176.8 197 59.4
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 2.8e-42 176.0 198 57.6
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 4.7e-42 175.3 197 58.9
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 6.2e-42 174.9 209 56.0
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 6.2e-42 174.9 195 55.9
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.4e-41 173.7 210 51.9
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 1.8e-41 173.3 182 59.3
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.4e-41 172.9 182 57.1
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.1e-41 172.6 196 58.2
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.1e-41 172.6 196 58.2
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 3.1e-41 172.6 196 53.1
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 4.0e-41 172.2 218 54.6
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 1.5e-40 170.2 195 55.4
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 2.6e-40 169.5 194 54.6
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 2.6e-40 169.5 198 54.0
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 4.4e-40 168.7 181 56.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 4.4e-40 168.7 182 58.8
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 5.8e-40 168.3 181 55.8
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 5.8e-40 168.3 181 55.8
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 7.6e-40 167.9 181 55.2
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 9.9e-40 167.5 181 55.2
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.2e-39 166.4 198 53.5
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 6.4e-39 164.9 196 55.1
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 6.4e-39 164.9 193 55.4
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 8.4e-39 164.5 191 56.0
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.1e-38 164.1 225 50.7
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.4e-38 163.7 191 55.5
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 1.4e-38 163.7 210 51.4
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 1.9e-38 163.3 201 54.2
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.9e-38 163.3 186 53.8
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 4.1e-38 162.2 183 56.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.6e-37 160.2 193 52.8
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 1.6e-37 160.2 181 56.4
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.6e-37 160.2 181 55.2
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 1.6e-37 160.2 212 50.9
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 7.8e-37 157.9 181 54.7
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 1.0e-36 157.5 181 55.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.7e-36 156.8 205 54.1
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 3.9e-36 155.6 200 50.0
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 5.1e-36 155.2 221 48.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 6.6e-36 154.8 191 52.9
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 8.6e-36 154.5 195 54.9
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.9e-35 153.3 182 50.5
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 1.9e-35 153.3 209 47.8
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 5.6e-35 151.8 184 53.3
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 7.3e-35 151.4 204 50.5
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 7.3e-35 151.4 209 47.4
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-34 150.6 197 50.8
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 1.2e-34 150.6 227 46.3
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.1e-34 149.8 183 51.9
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 2.1e-34 149.8 208 49.5
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 1.8e-33 146.7 181 53.6
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 3.1e-33 146.0 175 52.0
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.0e-33 145.6 169 56.8
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.2e-32 144.1 189 47.1
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 1.7e-31 140.2 180 50.0
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 6.4e-31 138.3 175 50.9
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 6.4e-31 138.3 175 50.9
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 6.4e-31 138.3 178 49.4
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 6.4e-31 138.3 179 49.7
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 8.4e-31 137.9 231 44.2
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 8.4e-31 137.9 231 44.2
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.4e-30 136.3 183 48.1
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 3.2e-30 136.0 218 45.0
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 7.8e-29 131.3 191 50.8
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.5e-27 126.3 204 44.6
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.6e-27 125.2 166 51.2
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.3e-26 124.0 190 41.1
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 1.8e-25 120.2 155 49.0
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 5.8e-24 115.2 133 55.6
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 3.8e-23 112.5 134 57.5
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 4.2e-22 109.0 176 45.5
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.6e-21 107.1 183 44.3
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 1.9e-19 100.1 143 47.6
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 7.4e-19 98.2 180 38.3
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 2.8e-18 96.3 166 40.4
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 1.8e-17 93.6 129 48.8
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 5.3e-17 92.0 184 37.0
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.3e-15 87.4 177 37.9
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.7e-15 87.0 64 68.8
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 4.9e-15 85.5 195 34.4
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 4.2e-14 82.4 118 54.2
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.7e-13 79.7 174 32.2
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 3.5e-13 79.3 169 37.9
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 4.8e-10 68.9 130 38.5
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 1.8e-09 67.0 109 45.9
BcaB07g29688 Brassica carinata HOM05D005391 ORTHO05D006694 3.2e-06 56.2 44 61.4


User provided reference genes

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