Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 4.2e-178 627.9 307 100.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 1.3e-158 563.1 306 88.9
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.1e-141 506.9 307 80.5
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 3.8e-139 498.4 307 78.5
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.5e-138 495.7 306 76.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.3e-138 495.4 306 76.5
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 8.0e-137 490.7 305 76.1
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 5.4e-133 478.0 305 74.4
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 5.4e-133 478.0 306 73.9
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.5e-132 475.3 307 73.6
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 7.8e-132 474.2 307 73.0
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 7.8e-132 474.2 305 73.8
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.3e-131 473.4 306 74.8
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.3e-131 472.6 306 73.9
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 3.9e-131 471.9 306 73.2
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 5.0e-131 471.5 305 74.4
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.9e-130 469.5 306 72.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.9e-130 469.5 304 72.7
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.9e-130 469.5 305 73.8
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.9e-130 469.5 312 72.4
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 3.3e-130 468.8 307 73.3
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 4.3e-130 468.4 305 73.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 1.2e-129 466.8 306 74.5
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.2e-129 466.8 305 73.4
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 2.1e-129 466.1 306 72.2
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 2.3e-128 462.6 306 72.2
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 3.1e-128 462.2 305 71.8
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 5.2e-128 461.5 319 70.5
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 1.5e-127 459.9 312 72.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 2.6e-127 459.1 307 72.6
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.4e-127 458.8 306 72.2
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 7.5e-127 457.6 305 69.5
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 9.8e-127 457.2 304 72.4
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 9.8e-127 457.2 305 71.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.3e-126 456.8 281 77.9
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.7e-126 456.4 302 72.2
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.1e-125 453.8 305 70.8
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.4e-125 453.4 305 69.8
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 7.0e-125 451.1 305 71.8
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 7.0e-125 451.1 305 69.5
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.2e-124 450.3 302 70.2
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.7e-124 449.1 305 70.2
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 2.7e-124 449.1 305 70.8
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 4.6e-124 448.4 305 70.2
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.7e-123 446.4 298 72.1
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.3e-123 446.0 302 69.9
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 3.0e-123 445.7 305 69.8
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 5.0e-123 444.9 306 70.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 8.6e-123 444.1 305 69.8
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.5e-122 443.4 306 69.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.9e-122 443.0 306 68.6
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 2.5e-122 442.6 338 63.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 3.3e-122 442.2 305 69.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 5.6e-122 441.4 307 69.4
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 9.5e-122 440.7 306 68.0
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 3.6e-121 438.7 289 73.7
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.4e-120 436.8 311 67.5
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.4e-120 436.8 305 68.5
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.3e-120 436.0 306 67.6
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 4.0e-120 435.3 306 69.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 4.0e-120 435.3 302 69.2
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 5.2e-120 434.9 282 76.6
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 8.9e-120 434.1 302 66.6
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.2e-119 433.7 312 67.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.5e-119 433.3 305 69.2
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 4.4e-119 431.8 305 69.2
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 5.8e-119 431.4 337 62.9
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 9.8e-119 430.6 334 63.8
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.9e-118 429.1 302 66.6
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 6.4e-118 427.9 305 68.5
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 6.4e-118 427.9 305 68.5
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.1e-117 427.2 302 66.2
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.1e-117 427.2 305 68.9
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.4e-117 426.8 282 74.8
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 7.1e-117 424.5 281 69.4
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 9.2e-117 424.1 306 66.0
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 2.7e-116 422.5 302 64.6
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 3.5e-116 422.2 303 66.7
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 7.8e-116 421.0 298 67.4
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.7e-115 419.9 305 67.5
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.2e-113 413.7 306 65.7
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 2.1e-113 412.9 305 66.2
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.8e-113 412.5 310 64.8
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 3.6e-113 412.1 345 61.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 3.6e-113 412.1 283 69.3
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.8e-112 409.8 292 64.4
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.9e-110 402.5 283 69.6
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 8.4e-110 401.0 326 61.7
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 6.0e-108 394.8 309 62.5
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 8.6e-107 391.0 366 54.4
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.3e-106 389.0 285 68.8
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 4.4e-103 378.6 311 61.4
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 4.8e-97 358.6 316 57.0
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 6.4e-94 348.2 306 56.2
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 8.4e-94 347.8 299 59.9
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.4e-93 346.3 307 56.7
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 2.4e-93 346.3 274 60.9
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 7.1e-93 344.7 310 57.7
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.3e-91 340.5 285 61.8
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.3e-91 340.5 302 55.6
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 8.1e-89 331.3 306 55.6
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 7.6e-87 324.7 219 69.9
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 7.9e-84 314.7 283 55.5
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 3.9e-83 312.4 297 52.9
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 2.5e-82 309.7 237 63.7
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.3e-82 309.3 224 64.7
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 4.3e-74 282.3 199 66.3
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.4e-72 277.3 195 70.3
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 5.9e-71 271.9 311 46.3
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.7e-70 270.4 194 66.0
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 5.5e-69 265.4 200 64.5
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 7.2e-69 265.0 194 67.5
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 1.5e-66 257.3 219 59.4
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 3.7e-65 252.7 167 73.1
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 1.1e-61 241.1 236 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.5e-53 213.4 208 51.0
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 3.2e-53 213.0 392 35.5
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 2.7e-52 209.9 305 41.6
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 5.2e-51 205.7 137 73.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.0e-47 193.7 152 57.2
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.7e-46 190.7 166 59.0
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 5.9e-39 165.6 131 61.8
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.9e-38 163.3 293 35.5
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 8.0e-36 155.2 354 31.6
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.4e-35 154.5 108 67.6
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 5.7e-34 149.1 113 61.9
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 2.8e-28 130.2 271 31.4
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.5e-26 122.1 83 68.7
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 8.3e-25 118.6 144 45.8
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 8.3e-17 92.0 81 58.0
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 4.3e-13 79.7 62 61.3
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.2e-12 78.2 59 59.3
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 1.8e-11 74.3 158 33.5
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 4.0e-11 73.2 79 48.1
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.9e-09 67.0 70 50.0
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 7.0e-08 62.4 36 80.6
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 2.0e-07 60.8 55 49.1


User provided reference genes

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