Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 2.1e-271 938.3 452 100.0
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 2.9e-199 698.7 444 77.3
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.8e-185 652.9 441 73.2
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 1.2e-184 650.2 435 72.9
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 5.8e-184 647.9 441 72.6
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 6.4e-183 644.4 441 71.9
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 3.6e-178 628.6 445 68.1
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.5e-176 623.2 431 69.1
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 6.4e-175 617.8 447 67.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 5.4e-174 614.8 441 66.7
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 2.1e-173 612.8 439 67.9
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 8.1e-170 600.9 435 66.0
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.8e-169 599.7 453 66.2
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 3.1e-169 599.0 440 66.8
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 3.1e-169 599.0 446 65.5
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 6.9e-169 597.8 435 66.4
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 7.6e-168 594.3 438 66.2
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 7.6e-168 594.3 439 67.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 9.9e-168 594.0 442 65.6
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 4.9e-167 591.7 448 64.5
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 4.9e-167 591.7 436 67.2
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.4e-166 590.1 447 64.2
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 9.3e-166 587.4 448 65.8
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.3e-164 583.6 438 65.3
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 6.6e-164 581.3 449 63.9
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 8.7e-164 580.9 435 64.8
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.1e-163 580.5 432 65.7
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 7.3e-163 577.8 434 63.4
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.3e-162 577.0 434 65.0
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 2.8e-162 575.9 440 65.0
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 3.6e-162 575.5 444 63.1
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 1.8e-161 573.2 437 63.2
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 1.5e-160 570.1 433 64.0
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 2.0e-160 569.7 433 64.7
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 4.5e-160 568.5 433 64.4
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.7e-159 566.6 434 63.8
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.1e-158 563.9 431 62.9
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.1e-158 563.9 446 61.7
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 1.4e-158 563.5 442 63.3
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 2.4e-158 562.8 430 65.8
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.2e-158 562.4 346 74.0
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 4.2e-158 562.0 443 63.0
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 9.3e-158 560.8 430 64.9
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 4.6e-157 558.5 441 62.1
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.6e-157 558.5 344 75.0
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.8e-156 556.6 433 62.6
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 7.4e-155 551.2 437 61.6
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.3e-154 550.4 436 61.0
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 3.7e-154 548.9 452 60.4
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 4.0e-153 545.4 431 61.7
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 6.9e-153 544.7 441 61.0
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 9.0e-153 544.3 434 61.5
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.2e-152 543.9 431 61.5
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 2.6e-152 542.7 423 65.5
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 4.5e-152 542.0 439 61.3
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 4.5e-152 542.0 433 60.0
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 5.8e-152 541.6 461 59.0
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 7.6e-152 541.2 443 60.9
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 9.9e-152 540.8 438 60.0
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 1.3e-151 540.4 433 62.1
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.2e-151 539.7 438 60.0
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 2.9e-151 539.3 435 61.1
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.9e-151 539.3 445 60.7
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 4.9e-151 538.5 389 66.1
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.4e-150 537.0 440 60.5
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.4e-150 537.0 434 61.3
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 3.2e-150 535.8 439 60.6
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 4.2e-150 535.4 440 60.2
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 1.2e-149 533.9 449 59.7
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.6e-149 533.5 438 59.8
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 2.1e-149 533.1 438 59.1
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 2.1e-149 533.1 405 66.4
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 6.0e-149 531.6 431 60.3
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 7.9e-149 531.2 438 59.6
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.3e-148 530.4 436 60.6
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 5.1e-148 528.5 436 60.6
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 5.1e-148 528.5 436 60.6
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 5.1e-148 528.5 436 60.6
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 5.1e-148 528.5 436 60.3
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.1e-148 528.5 438 59.4
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 6.7e-148 528.1 424 63.0
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 8.7e-148 527.7 436 60.1
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 4.3e-147 525.4 431 60.6
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 7.4e-147 524.6 469 55.7
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 1.3e-146 523.9 253 94.9
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 2.8e-146 522.7 448 59.4
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 3.7e-146 522.3 446 58.5
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 6.2e-146 521.5 438 59.8
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 8.2e-146 521.2 432 60.2
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 1.8e-145 520.0 435 59.1
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 1.8e-145 520.0 452 58.4
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 2.4e-145 519.6 448 60.3
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 9.0e-145 517.7 389 63.5
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.2e-144 517.3 438 58.9
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 1.2e-144 517.3 443 58.0
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.5e-144 516.9 445 57.1
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 3.4e-144 515.8 436 59.2
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 4.5e-144 515.4 427 60.4
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 5.8e-144 515.0 438 58.4
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 1.0e-143 514.2 436 58.3
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 1.0e-143 514.2 436 58.3
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 1.0e-143 514.2 436 58.3
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 4.9e-143 511.9 436 58.3
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 8.4e-143 511.1 433 57.5
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.4e-142 510.4 433 57.7
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.9e-142 510.0 447 59.1
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 2.5e-142 509.6 434 58.5
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 3.2e-142 509.2 437 57.7
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 7.1e-142 508.1 427 59.7
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 9.3e-142 507.7 437 57.7
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 3.5e-141 505.8 431 58.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.0e-141 505.0 428 58.6
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-139 500.7 432 59.0
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 1.9e-139 500.0 438 56.8
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 1.3e-138 497.3 438 55.3
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 6.9e-137 491.5 428 57.0
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-136 490.0 427 59.0
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 3.4e-136 489.2 430 56.7
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 7.7e-136 488.0 361 63.2
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-135 487.6 426 58.9
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 2.9e-135 486.1 427 58.8
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 3.8e-135 485.7 427 58.8
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 3.8e-135 485.7 444 56.1
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 8.5e-135 484.6 328 66.8
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.9e-134 483.4 439 57.2
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 7.2e-134 481.5 428 58.2
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 2.7e-133 479.6 428 58.2
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 6.1e-133 478.4 345 69.9
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 9.7e-131 471.1 423 57.4
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.3e-130 470.7 428 53.3
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 4.8e-130 468.8 436 54.4
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-128 464.2 428 55.8
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 7.7e-128 461.5 344 60.8
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 8.8e-124 448.0 287 70.0
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 9.7e-123 444.5 338 61.2
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.3e-122 444.1 423 52.0
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.6e-120 436.4 454 52.9
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 3.0e-116 422.9 342 57.3
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.8e-113 413.7 337 58.5
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 2.6e-112 409.8 342 56.1
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 7.7e-112 408.3 337 57.9
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.2e-111 406.8 374 54.0
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 5.5e-110 402.1 445 50.3
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 8.2e-106 388.3 236 73.3
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 2.4e-105 386.7 246 69.5
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 4.1e-105 386.0 301 59.1
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.0e-103 381.3 366 50.0
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 2.5e-102 376.7 338 52.7
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 2.3e-100 370.2 340 52.1
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 3.0e-100 369.8 339 52.5
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 2.8e-98 363.2 322 60.2
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 2.7e-96 356.7 338 50.6
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 8.6e-95 351.7 340 48.8
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 8.6e-95 351.7 339 50.1
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.9e-94 350.5 236 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 7.5e-91 338.6 340 48.8
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 2.2e-90 337.0 236 63.6
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.9e-90 335.9 348 47.4
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 5.8e-83 312.4 236 57.6
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 2.0e-80 303.9 381 44.1
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.6e-80 302.8 343 44.6
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.3e-78 296.2 348 42.2
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.4e-76 291.2 346 43.1
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 1.8e-76 290.8 328 44.8
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 6.8e-76 288.9 355 42.3
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 6.8e-76 288.9 339 41.3
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 7.0e-73 278.9 346 40.8
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 8.6e-71 271.9 236 52.1
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 4.1e-65 253.1 344 39.0
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 3.8e-58 229.9 386 34.7
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.4e-44 184.1 149 61.7
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 3.3e-38 163.7 154 53.9
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 9.0e-36 155.6 413 27.8
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 2.5e-22 110.9 149 50.3
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.3e-22 110.2 100 49.0
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 4.3e-22 110.2 82 56.1
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.0e-19 101.3 119 39.5
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.1e-17 95.5 76 50.0
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.4e-15 88.6 86 45.3
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 7.7e-11 72.8 47 74.5
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.8e-10 70.5 87 43.7
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.2e-09 67.4 63 42.9


User provided reference genes

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