Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.2e-91 339.7 157 100.0
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.7e-42 176.4 122 71.3
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 4.7e-40 168.3 122 68.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.8e-36 156.4 101 73.3
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.6e-35 153.3 101 71.3
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.6e-35 152.5 100 72.0
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.6e-35 152.5 100 72.0
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.5e-35 152.1 101 69.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 3.5e-35 152.1 101 71.3
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 4.5e-35 151.8 101 70.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 5.9e-35 151.4 100 71.0
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.0e-34 150.6 100 71.0
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 1.7e-34 149.8 101 70.3
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 2.2e-34 149.4 100 69.0
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.2e-34 149.4 99 65.7
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.2e-34 149.4 101 68.3
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 3.8e-34 148.7 99 65.7
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.8e-34 148.7 99 65.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.8e-34 148.7 101 65.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 6.5e-34 147.9 120 63.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.5e-34 147.5 99 64.6
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 8.5e-34 147.5 101 69.3
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.5e-33 146.7 98 68.4
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 1.5e-33 146.7 101 67.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 2.5e-33 146.0 119 60.5
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 3.2e-33 145.6 119 60.5
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.2e-33 145.2 101 67.3
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 5.5e-33 144.8 101 69.3
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.4e-33 144.1 100 69.0
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 9.4e-33 144.1 101 65.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 9.4e-33 144.1 101 64.4
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.2e-32 143.7 102 67.6
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 1.2e-32 143.7 100 67.0
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.1e-32 142.9 100 67.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.1e-32 142.9 119 57.1
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 3.6e-32 142.1 101 65.3
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.6e-32 142.1 100 66.0
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.7e-32 141.7 118 59.3
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.7e-32 141.7 101 67.3
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 6.1e-32 141.4 100 65.0
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 6.1e-32 141.4 126 57.9
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-32 141.0 100 64.0
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-32 141.0 100 64.0
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-32 141.0 100 64.0
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-32 141.0 100 64.0
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 8.0e-32 141.0 100 66.0
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 8.0e-32 141.0 104 62.5
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.0e-31 140.6 100 65.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.4e-31 140.2 100 65.0
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.4e-31 140.2 100 64.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.8e-31 139.8 120 56.7
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.3e-31 139.4 100 65.0
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.3e-31 139.4 100 65.0
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.0e-31 139.0 119 57.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 4.0e-31 138.7 100 65.0
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 5.2e-31 138.3 121 56.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 5.2e-31 138.3 120 56.7
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 6.7e-31 137.9 100 63.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 6.7e-31 137.9 115 60.9
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.6e-30 136.0 100 64.0
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 2.6e-30 136.0 100 64.0
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.3e-30 135.6 102 61.8
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.4e-30 135.2 100 65.0
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 5.7e-30 134.8 101 64.4
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 7.5e-30 134.4 100 64.0
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.5e-30 134.4 117 56.4
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 7.5e-30 134.4 117 57.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.7e-29 132.1 100 65.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.7e-29 132.1 119 53.8
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 4.8e-29 131.7 119 53.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 4.8e-29 131.7 94 62.8
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 4.8e-29 131.7 101 59.4
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 6.3e-29 131.3 100 63.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 6.3e-29 131.3 100 62.0
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-28 130.6 100 63.0
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-28 130.6 117 53.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.1e-28 130.6 100 59.0
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 1.4e-28 130.2 102 59.8
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.8e-28 129.8 101 58.4
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.4e-28 129.4 119 52.9
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.4e-28 129.4 98 59.2
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.4e-28 129.4 100 63.0
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.1e-28 129.0 102 59.8
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.1e-28 129.0 101 60.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 7.0e-28 127.9 100 62.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 9.1e-28 127.5 100 59.0
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 1.6e-27 126.7 101 60.4
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.6e-27 126.7 102 59.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.5e-27 125.6 119 52.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.5e-27 125.6 99 59.6
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 7.7e-27 124.4 117 50.4
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.9e-26 122.5 100 52.0
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.9e-26 122.5 132 45.5
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.5e-26 121.3 117 51.3
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.1e-25 120.6 101 58.4
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 5.5e-25 118.2 88 58.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 9.4e-25 117.5 89 59.6
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 8.0e-24 114.4 96 55.2
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.0e-23 114.0 92 56.5
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 6.8e-23 111.3 97 57.7
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.0e-22 109.8 96 54.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.3e-21 107.1 96 50.0
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.7e-21 106.7 119 42.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.7e-21 106.7 119 44.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 2.2e-21 106.3 96 47.9
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.8e-21 105.1 96 49.0
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 4.8e-21 105.1 119 40.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.4e-20 102.8 88 53.4
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 3.5e-19 99.0 96 46.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.3e-18 97.1 88 51.1
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 6.1e-16 88.2 62 62.9
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.3e-15 86.3 69 56.5
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.0e-15 85.5 96 45.8
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.2e-15 85.1 60 58.3
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 8.9e-15 84.3 98 40.8
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.6e-14 82.8 102 37.3
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 7.5e-14 81.3 94 41.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 7.5e-14 81.3 55 67.3
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.2e-13 79.7 94 40.4
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-13 79.7 94 40.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.2e-13 79.7 94 40.4
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.2e-13 79.7 94 40.4
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.2e-13 79.7 94 40.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.9e-13 78.6 102 38.2
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.6e-11 73.6 103 34.0
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 2.7e-11 72.8 102 34.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 2.7e-11 72.8 102 34.3
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 5.9e-11 71.6 63 49.2
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.0e-10 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.6e-10 67.8 47 63.8
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 9.5e-09 64.3 95 31.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.2e-08 63.9 91 39.6


User provided reference genes

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