Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 1.1e-125 453.4 239 100.0
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 5.2e-107 391.3 240 88.3
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 1.5e-98 363.2 239 81.6
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 9.1e-88 327.4 239 74.5
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 2.7e-87 325.9 243 72.4
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 7.7e-87 324.3 239 74.1
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.0e-86 323.9 239 73.6
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 1.0e-86 323.9 239 73.6
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.5e-85 318.2 239 72.4
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 5.5e-85 318.2 239 72.4
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.0e-75 287.3 234 66.2
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 1.4e-75 287.0 239 66.1
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 2.6e-74 282.7 244 63.9
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 1.1e-72 277.3 237 64.1
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 7.8e-71 271.2 205 71.7
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.9e-69 266.5 232 65.1
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 1.8e-67 260.0 236 61.4
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 9.8e-66 254.2 240 61.2
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 2.9e-65 252.7 254 58.7
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 1.4e-64 250.4 210 67.6
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 7.0e-64 248.1 245 59.2
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 7.0e-64 248.1 238 61.8
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 4.6e-63 245.4 245 58.8
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 6.0e-63 245.0 242 59.5
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 7.8e-63 244.6 240 58.8
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 1.0e-62 244.2 207 65.2
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 2.3e-62 243.0 208 66.3
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 3.9e-62 242.3 235 60.4
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 5.6e-61 238.4 237 61.6
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 9.5e-61 237.7 238 60.9
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 9.5e-61 237.7 192 68.8
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 8.1e-60 234.6 237 57.0
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 1.4e-59 233.8 237 60.8
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 3.1e-59 232.6 248 57.3
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 4.0e-59 232.3 217 63.1
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 2.0e-58 229.9 250 55.2
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 5.8e-58 228.4 207 59.9
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.7e-57 226.9 243 58.8
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 2.2e-57 226.5 206 60.7
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 2.9e-57 226.1 236 57.6
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 1.9e-56 223.4 236 55.1
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 4.1e-56 222.2 225 58.2
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 7.1e-56 221.5 204 61.3
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.2e-55 220.7 235 56.2
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 2.1e-55 219.9 183 68.3
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 2.1e-55 219.9 239 58.6
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 3.5e-55 219.2 203 65.5
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 6.0e-55 218.4 210 58.1
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 2.3e-54 216.5 244 54.5
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 3.0e-54 216.1 199 57.8
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 3.9e-54 215.7 271 51.7
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 1.9e-53 213.4 228 55.7
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 2.5e-53 213.0 274 51.8
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 1.6e-52 210.3 239 54.0
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 2.8e-52 209.5 244 56.1
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 3.6e-52 209.1 224 54.9
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 8.1e-52 208.0 206 57.3
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.1e-51 207.6 286 49.7
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 1.1e-51 207.6 212 56.1
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 1.4e-51 207.2 212 56.6
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 1.4e-51 207.2 212 56.6
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 2.4e-51 206.5 250 52.0
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 8.9e-51 204.5 244 55.7
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 8.9e-51 204.5 228 53.9
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 1.2e-50 204.1 213 56.3
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 2.0e-50 203.4 212 56.6
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 2.6e-50 203.0 207 58.0
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 3.4e-50 202.6 207 58.0
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 5.8e-50 201.8 212 54.7
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.1e-48 197.6 216 54.2
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 1.4e-48 197.2 243 50.6
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 2.4e-48 196.4 218 54.1
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.4e-48 196.4 226 52.7
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 3.2e-48 196.1 168 64.3
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 5.4e-48 195.3 224 52.7
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 5.4e-48 195.3 197 53.8
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 5.4e-48 195.3 171 64.3
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 9.2e-48 194.5 204 53.9
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.7e-47 193.0 184 60.3
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 3.5e-47 192.6 281 41.6
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 6.0e-47 191.8 215 53.0
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 1.0e-46 191.0 245 50.2
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 1.7e-46 190.3 236 50.8
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 5.1e-46 188.7 248 49.2
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 6.6e-46 188.3 195 54.9
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 7.3e-45 184.9 144 66.7
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 1.2e-44 184.1 213 52.1
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 2.8e-44 183.0 213 51.6
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 2.4e-43 179.9 137 67.9
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 9.9e-42 174.5 221 47.5
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 1.7e-41 173.7 280 44.3
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 2.4e-40 169.9 239 46.0
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 5.4e-40 168.7 115 73.0
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 6.0e-39 165.2 198 52.0
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 1.7e-38 163.7 208 47.1
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 4.8e-36 155.6 185 53.5
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 4.8e-36 155.6 140 61.4
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 1.5e-34 150.6 261 42.5
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 1.7e-33 147.1 167 50.9
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 4.9e-33 145.6 206 49.0
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 9.3e-32 141.4 169 51.5
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 1.1e-24 117.9 209 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 2.1e-23 113.6 139 46.0
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 7.9e-23 111.7 192 45.3
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 7.9e-23 111.7 146 47.9
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 7.9e-23 111.7 129 48.8
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 1.3e-22 110.9 133 46.6
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 9.6e-21 104.8 101 59.4
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 1.3e-20 104.4 94 63.8
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 4.5e-18 95.9 112 55.4
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 2.2e-17 93.6 112 54.5
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 1.9e-16 90.5 69 65.2
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 1.1e-13 81.3 119 45.4
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 1.5e-13 80.9 176 34.7
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 1.8e-11 73.9 50 70.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.4e-11 73.6 54 64.8
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 1.2e-10 71.2 138 37.0
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 4.5e-10 69.3 44 79.5
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 3.8e-09 66.2 96 46.9
PGSC0003DMG402008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 4.2e-08 62.8 42 61.9
Sabra19G0056100 Salix brachista HOM05D006369 ORTHO05D007764 5.5e-08 62.4 79 45.6
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 2.7e-07 60.1 155 33.5
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 5.1e-06 55.8 51 64.7


User provided reference genes

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