Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 0.0e+00 1075.8 593 100.0
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.8e-244 848.2 603 82.1
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 3.1e-121 439.9 675 51.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.9e-79 300.1 631 41.2
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.2e-57 226.9 646 36.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 5.4e-57 226.5 658 37.5
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.9e-56 222.6 646 36.7
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.7e-47 193.0 670 34.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 7.1e-41 172.9 307 47.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.6e-40 171.8 468 38.7
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 6.7e-39 166.4 738 31.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.1e-38 165.6 374 39.3
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 4.1e-36 157.1 764 29.8
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 5.9e-35 153.3 231 47.6
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.5e-30 138.7 709 30.7
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.7e-29 135.2 701 30.4
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.9e-28 129.8 251 39.8
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 6.9e-28 129.8 728 28.7
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.0e-27 128.3 692 29.5
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 5.0e-26 123.6 676 28.4
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 6.5e-26 123.2 342 36.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.5e-25 121.3 679 30.8
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 9.4e-25 119.4 133 55.6
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.2e-24 119.0 617 31.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.1e-24 118.2 519 30.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 6.1e-24 116.7 658 28.7
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 6.1e-24 116.7 664 27.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.0e-23 115.9 678 29.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.4e-23 115.5 257 38.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.4e-23 115.5 276 37.3
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.3e-23 114.8 286 37.8
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 5.1e-23 113.6 823 28.1
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 6.7e-23 113.2 659 27.0
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 6.7e-23 113.2 296 36.1
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.5e-22 112.1 433 31.6
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.3e-22 110.9 721 28.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.7e-22 110.2 237 40.5
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 7.4e-22 109.8 279 39.4
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.8e-21 107.8 503 30.8
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.7e-21 107.5 579 29.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.7e-21 107.5 734 27.1
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-20 105.9 637 28.9
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.1e-20 105.9 670 27.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-20 104.8 558 31.2
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.1e-20 104.4 621 28.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 4.1e-20 104.0 180 41.7
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 9.1e-20 102.8 529 29.5
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-19 102.4 626 27.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.5e-19 102.1 664 27.0
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.5e-19 100.9 685 28.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.5e-19 100.5 817 26.3
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 5.9e-19 100.1 228 36.0
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 5.9e-19 100.1 320 34.4
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 7.7e-19 99.8 817 26.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-18 99.0 625 29.3
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.3e-18 99.0 626 28.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.9e-18 97.8 163 44.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 5.0e-18 97.1 279 33.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 5.0e-18 97.1 627 29.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 5.0e-18 97.1 448 30.1
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 6.5e-18 96.7 169 41.4
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 6.5e-18 96.7 169 41.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.5e-18 96.7 621 29.8
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 8.5e-18 96.3 700 27.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.1e-17 95.9 192 39.6
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 1.1e-17 95.9 304 32.6
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.5e-17 95.5 653 28.5
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.5e-17 94.7 75 65.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.5e-17 93.6 401 30.2
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.5e-17 93.6 401 30.2
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 5.5e-17 93.6 775 28.3
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 9.4e-17 92.8 373 31.1
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.1e-16 91.7 424 29.7
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 2.7e-16 91.3 340 29.7
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.6e-16 90.9 620 28.2
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 6.1e-16 90.1 361 32.1
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 8.0e-16 89.7 584 27.6
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-15 89.0 635 28.2
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.3e-15 88.2 711 26.7
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.0e-15 87.8 366 29.5
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 3.9e-15 87.4 688 27.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 6.7e-15 86.7 207 33.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.6e-14 84.7 656 26.8
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 3.3e-14 84.3 410 24.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.3e-14 84.3 521 28.2
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.3e-14 84.3 502 30.5
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 4.4e-14 84.0 455 30.3
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 7.4e-14 83.2 513 26.7
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 9.7e-14 82.8 736 26.8
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 9.7e-14 82.8 418 29.4
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.3e-13 82.4 493 29.0
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-13 82.4 696 26.1
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.3e-13 82.4 498 29.9
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.7e-13 82.0 344 34.0
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-13 81.6 606 26.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.7e-13 80.9 384 29.9
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.3e-13 80.1 432 28.5
FAN24G2560 Fragaria x ananassa HOM05D012506 ORTHO05D046285 8.2e-13 79.7 349 32.7
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 8.2e-13 79.7 446 25.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.1e-12 79.3 624 27.4
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.4e-12 79.0 264 31.8
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.6e-11 75.5 633 26.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.6e-11 75.5 516 26.6
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 2.6e-11 74.7 326 26.1
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.5e-11 74.3 479 28.0
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-11 73.9 492 26.8
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 4.5e-11 73.9 492 26.8
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 5.9e-11 73.6 575 27.5
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 7.7e-11 73.2 614 28.2
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.0e-10 72.8 478 27.4
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 3.8e-10 70.9 425 29.2
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 3.8e-10 70.9 273 30.8
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 6.5e-10 70.1 607 26.2
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.1e-09 69.3 508 26.2
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.9e-09 68.6 475 26.7
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.6e-08 65.5 407 28.3
FvH4_2g06700 Fragaria vesca HOM05D012506 ORTHO05D003557 2.1e-08 65.1 100 45.0
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.7e-08 64.7 532 26.9
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.7e-08 64.7 115 39.1
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 4.7e-08 63.9 357 27.7
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 4.7e-08 63.9 388 28.1
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 6.1e-08 63.5 89 48.3
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 6.1e-08 63.5 89 43.8
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.0e-07 62.8 111 35.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.4e-07 62.4 305 28.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.8e-07 62.0 46 63.0
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.3e-07 61.6 603 28.0
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.0e-07 61.2 618 25.6
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 5.2e-07 60.5 163 33.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 6.8e-07 60.1 614 25.2
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 8.8e-07 59.7 228 27.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.2e-06 59.3 346 28.6
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 3.4e-06 57.8 39 66.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.4e-06 57.8 521 28.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 5.7e-06 57.0 497 27.0
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.7e-06 56.2 33 75.8


User provided reference genes

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