Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 4.6e-200 701.0 365 100.0
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 7.5e-142 507.7 366 74.6
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 2.5e-129 466.1 346 72.8
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.1e-122 441.8 374 65.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-119 434.1 375 64.5
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 6.4e-117 424.9 386 61.9
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 8.4e-109 397.9 356 62.9
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 4.2e-108 395.6 364 60.4
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.0e-106 391.0 358 65.9
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 8.1e-104 381.3 362 59.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.2e-102 377.5 361 59.6
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.2e-100 369.4 361 58.2
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.5e-100 368.6 364 58.8
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 6.0e-99 365.2 360 58.1
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.3e-98 364.0 353 56.4
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 5.1e-98 362.1 347 57.3
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.3e-97 359.4 347 58.5
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 5.7e-97 358.6 364 55.2
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 7.4e-97 358.2 355 56.1
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.1e-96 356.7 347 58.2
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 8.2e-96 354.8 370 55.1
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.8e-95 353.6 347 57.9
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 9.0e-95 351.3 347 57.3
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 9.0e-95 351.3 346 56.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 3.4e-94 349.4 362 56.1
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 4.5e-94 349.0 354 55.4
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 4.5e-94 349.0 364 55.5
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 3.8e-93 345.9 353 55.5
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.2e-92 342.8 361 55.1
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 7.2e-92 341.7 365 54.5
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 2.1e-91 340.1 331 58.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.9e-89 333.6 362 53.0
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 2.2e-88 330.1 348 52.9
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 2.8e-88 329.7 358 51.7
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 8.2e-88 328.2 356 52.2
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 4.1e-87 325.9 349 54.4
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 5.3e-87 325.5 346 53.2
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 9.0e-87 324.7 347 54.2
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.5e-86 323.9 403 49.4
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.3e-85 320.9 351 50.7
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.7e-85 320.5 351 50.7
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 2.5e-84 316.6 355 53.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.2e-84 315.8 363 48.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 7.2e-84 315.1 360 51.9
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 4.6e-83 312.4 357 49.6
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 7.9e-83 311.6 256 64.5
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-82 310.5 355 53.0
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.3e-82 310.1 280 61.4
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 5.1e-82 308.9 353 53.3
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 8.8e-82 308.1 342 51.8
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 2.2e-80 303.5 355 51.0
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.2e-80 303.5 360 48.3
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 4.8e-80 302.4 352 49.4
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.3e-80 302.0 361 48.2
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.8e-79 300.4 318 54.4
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 2.4e-79 300.1 355 48.7
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.0e-77 294.7 349 50.1
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.7e-77 293.9 358 49.7
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 2.2e-77 293.5 362 47.8
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.1e-76 291.2 348 52.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.6e-75 286.2 338 51.5
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 6.1e-75 285.4 359 47.1
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 4.4e-73 279.3 342 48.0
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 5.7e-73 278.9 396 48.5
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.1e-71 274.6 334 48.8
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.8e-71 273.9 389 45.5
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 3.1e-71 273.1 373 45.8
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.0e-70 270.4 338 50.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 4.5e-70 269.2 342 49.1
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 6.5e-69 265.4 345 45.5
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 1.5e-68 264.2 336 47.3
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 4.2e-68 262.7 340 47.9
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 4.2e-68 262.7 339 49.0
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 7.2e-68 261.9 342 46.2
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.2e-68 261.9 340 48.2
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 9.4e-68 261.5 340 47.1
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.2e-67 261.2 372 43.8
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-67 260.8 348 46.3
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.6e-67 260.8 339 47.8
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 2.7e-67 260.0 314 47.1
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 8.0e-67 258.5 342 47.7
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.8e-66 257.3 339 48.1
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.3e-66 256.9 338 47.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 5.2e-66 255.8 332 47.3
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.2e-66 255.8 320 45.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.5e-65 254.2 339 46.9
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 4.4e-65 252.7 342 46.5
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 5.7e-65 252.3 457 38.1
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 4.8e-64 249.2 340 47.1
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 5.3e-63 245.7 286 46.9
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 7.7e-62 241.9 338 45.6
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.0e-61 241.5 390 43.1
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 6.5e-61 238.8 349 42.1
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 8.5e-61 238.4 345 42.6
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.5e-60 236.9 303 44.9
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.6e-59 234.2 374 43.6
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.5e-57 227.6 350 42.0
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 5.7e-57 225.7 264 47.3
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 5.7e-57 225.7 332 41.9
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 2.2e-53 213.8 197 59.9
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.8e-53 213.0 274 46.4
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 6.5e-53 212.2 208 57.7
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 5.5e-52 209.1 364 36.0
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 5.2e-50 202.6 350 38.0
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 2.0e-49 200.7 320 39.7
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.2e-48 197.2 366 38.0
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 6.3e-48 195.7 340 41.2
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 2.4e-47 193.7 278 44.2
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 3.1e-47 193.4 350 39.4
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.1e-47 193.4 207 50.2
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 7.0e-47 192.2 308 41.9
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.3e-44 183.0 208 50.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 3.6e-43 179.9 317 37.5
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-38 164.5 262 43.5
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-38 164.5 262 43.5
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-38 164.5 262 43.5
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-35 154.5 217 46.1
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.4e-34 151.4 309 34.0
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.8e-34 151.0 247 39.7
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.0e-33 147.5 121 62.8
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 3.4e-33 146.7 251 41.8
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 3.4e-33 146.7 210 44.8
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 5.8e-33 146.0 219 41.6
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 1.7e-29 134.4 164 44.5
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 4.9e-24 116.3 121 51.2
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.1e-23 115.2 406 29.3
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.3e-21 107.5 400 25.8
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 6.6e-21 105.9 114 45.6
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.3e-20 103.6 95 64.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 3.1e-18 97.1 104 52.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 4.0e-18 96.7 98 48.0
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.4e-15 87.4 201 33.3
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.1e-14 84.3 66 60.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 7.8e-14 82.4 66 59.1
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.4e-09 66.6 73 54.8
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 4.9e-08 63.2 139 36.0
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.1e-07 62.0 42 73.8
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 4.2e-07 60.1 137 32.8


User provided reference genes

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