Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1304400 Malus domestica HOM05D006889 ORTHO05D008614 2.5e-158 562.4 356 100.0
Prupe.2G323000 Prunus persica HOM05D006889 ORTHO05D008614 6.2e-133 478.0 359 76.6
MD07G1075300 Malus domestica HOM05D006889 ORTHO05D008614 5.8e-131 471.5 372 85.2
FAN03G0535 Fragaria x ananassa HOM05D006889 ORTHO05D008614 2.6e-123 446.0 359 71.0
RcHm_v2.0_Chr1g0383401 Rosa chinensis HOM05D006889 ORTHO05D008614 1.0e-122 444.1 359 71.6
FAN10G1689 Fragaria x ananassa HOM05D006889 ORTHO05D008614 5.5e-121 438.3 359 70.5
FAN10G2743 Fragaria x ananassa HOM05D006889 ORTHO05D008614 2.1e-120 436.4 359 70.2
FvH4_7g33430 Fragaria vesca HOM05D006889 ORTHO05D008614 3.3e-118 429.1 359 70.5
FAN01G0055 Fragaria x ananassa HOM05D006889 ORTHO05D008614 3.0e-111 406.0 338 68.6
Eucgr.K00107 Eucalyptus grandis HOM05D006889 ORTHO05D008614 2.2e-106 389.8 360 68.1
TAR369G0178 Trochodendron aralioides HOM05D006889 ORTHO05D008614 1.2e-104 384.0 356 63.2
QL09p026702 Quercus lobata HOM05D006889 ORTHO05D008614 3.6e-104 382.5 351 64.4
Ciclev10012044m.g Citrus clementina HOM05D006889 ORTHO05D008614 8.8e-103 377.9 354 64.1
Atru.chr12.2063 Acer truncatum HOM05D006889 ORTHO05D008614 2.6e-102 376.3 360 63.3
Lalb_Chr13g0293181 Lupinus albus HOM05D006889 ORTHO05D008614 2.2e-101 373.2 351 63.2
GSVIVG01024467001 Vitis vinifera HOM05D006889 ORTHO05D008614 2.2e-101 373.2 359 62.4
Manes.09G119000 Manihot esculenta HOM05D006889 ORTHO05D008614 8.2e-101 371.3 362 63.5
Sed0014561 Sechium edule HOM05D006889 ORTHO05D008614 8.2e-101 371.3 360 72.5
Haze_22241 Corylus avellana HOM05D006889 ORTHO05D008614 5.3e-100 368.6 353 62.9
Gohir.A06G144633 Gossypium hirsutum HOM05D006889 ORTHO05D008614 9.1e-100 367.9 354 63.3
Gorai.010G175600 Gossypium raimondii HOM05D006889 ORTHO05D008614 9.1e-100 367.9 354 63.3
Dinv25463 Davidia involucrata HOM05D006889 ORTHO05D008614 1.0e-98 364.4 372 59.4
Thecc.06G017600 Theobroma cacao HOM05D006889 ORTHO05D008614 1.0e-95 354.4 360 60.6
CSS0010313 Camellia sinensis var. sinensis HOM05D006889 ORTHO05D008614 3.0e-95 352.8 337 61.1
Migut.F00816 Erythranthe guttata HOM05D006889 ORTHO05D008614 4.0e-95 352.4 351 59.5
TWI60G1635 Tripterygium wilfordii HOM05D006889 ORTHO05D008614 6.7e-95 351.7 360 57.5
PGR142G0052 Punica granatum HOM05D006889 ORTHO05D008614 2.2e-93 346.7 367 68.9
Lj4g0013326 Lotus japonicus HOM05D006889 ORTHO05D008614 3.7e-93 345.9 357 61.9
AL4G32960 Arabidopsis lyrata HOM05D006889 ORTHO05D008614 1.8e-92 343.6 361 59.8
CiPaw.07G182100 Carya illinoinensis HOM05D006889 ORTHO05D008614 3.1e-92 342.8 332 63.0
Potri.001G412800 Populus trichocarpa HOM05D006889 ORTHO05D008614 9.1e-92 341.3 360 58.3
AT2G36740 Arabidopsis thaliana HOM05D006889 ORTHO05D008614 2.7e-91 339.7 360 59.7
Nn6g34807 Nelumbo nucifera HOM05D006889 ORTHO05D008614 1.0e-90 337.8 372 57.5
Carub.0004s1859 Capsella rubella HOM05D006889 ORTHO05D008614 1.7e-90 337.0 361 59.0
CDE08G0956 Ceratophyllum demersum HOM05D006889 ORTHO05D008614 5.0e-90 335.5 362 56.6
Sp4g19020 Schrenkiella parvula HOM05D006889 ORTHO05D008614 2.5e-89 333.2 358 66.8
Thhalv10016833m.g Eutrema salsugineum HOM05D006889 ORTHO05D008614 3.2e-89 332.8 359 67.1
PSO384G0326 Papaver somniferum HOM05D006889 ORTHO05D008614 3.2e-89 332.8 363 57.3
Aqoxy4G02722 Aquilegia oxysepala HOM05D006889 ORTHO05D008614 4.2e-89 332.4 353 58.4
Aa31LG5G21960 Aethionema arabicum HOM05D006889 ORTHO05D008614 7.2e-89 331.6 367 55.0
THA.LOC104805469 Tarenaya hassleriana HOM05D006889 ORTHO05D008614 3.6e-88 329.3 361 56.5
Phvul.002G186100 Phaseolus vulgaris HOM05D006889 ORTHO05D008614 1.0e-87 327.8 348 57.2
Ca_18207_v3 Cicer arietinum L. HOM05D006889 ORTHO05D008614 1.4e-87 327.4 346 55.2
BolC4t22783H Brassica oleracea HOM05D006889 ORTHO05D008614 2.3e-87 326.6 358 60.9
Oeu033252.2 Olea europaea HOM05D006889 ORTHO05D008614 2.3e-87 326.6 389 53.7
BcaC02g11793 Brassica carinata HOM05D006889 ORTHO05D008614 3.0e-87 326.2 358 60.9
C04p11290 Brassica napus HOM05D006889 ORTHO05D008614 3.0e-87 326.2 358 61.2
BolC4t22767H Brassica oleracea HOM05D006889 ORTHO05D008614 3.0e-87 326.2 358 60.9
BraA05t19868Z Brassica rapa HOM05D006889 ORTHO05D008614 5.2e-87 325.5 360 59.4
A05p09120 Brassica napus HOM05D006889 ORTHO05D008614 6.8e-87 325.1 360 59.4
BcaB02g09334 Brassica carinata HOM05D006889 ORTHO05D008614 8.8e-87 324.7 369 58.5
Solyc04g009830.3 Solanum lycopersicum HOM05D006889 ORTHO05D008614 1.2e-86 324.3 354 55.6
CsaV3_5G005080 Cucumis sativus L. HOM05D006889 ORTHO05D008614 2.6e-86 323.2 359 59.1
ECA238G0057 Erigeron canadensis HOM05D006889 ORTHO05D008614 5.7e-86 322.0 371 54.4
PSO339G0304 Papaver somniferum HOM05D006889 ORTHO05D008614 2.8e-85 319.7 363 56.5
CARHR131100 Cardamine hirsuta HOM05D006889 ORTHO05D008614 4.8e-85 318.9 362 66.3
Cpa.g.sc140.53 Carica papaya HOM05D006889 ORTHO05D008614 6.3e-85 318.5 363 56.7
Sopen04g004970 Solanum pennellii HOM05D006889 ORTHO05D008614 6.3e-85 318.5 355 55.5
Glyma.05G136000 Glycine max HOM05D006889 ORTHO05D008614 1.1e-84 317.8 345 54.2
Cc02_g09110 Coffea canephora HOM05D006889 ORTHO05D008614 1.4e-84 317.4 349 56.7
Psat7g087400 Pisum sativum HOM05D006889 ORTHO05D008614 4.1e-84 315.8 353 55.2
Ah.14g084260 Amaranthus hybridus HOM05D006889 ORTHO05D008614 4.5e-83 312.4 368 59.2
SalBow3G4178 Salvia bowleyana HOM05D006889 ORTHO05D008614 1.3e-82 310.8 369 54.5
vmacro10779 Vaccinium macrocarpon HOM05D006889 ORTHO05D008614 6.5e-82 308.5 340 57.9
HanXRQChr07g0200571 Helianthus annuus HOM05D006889 ORTHO05D008614 1.9e-81 307.0 381 52.2
Sabra16G0274900 Salix brachista HOM05D006889 ORTHO05D008614 3.2e-81 306.2 378 52.4
MSTRG.4328 Avicennia marina HOM05D006889 ORTHO05D008614 5.5e-81 305.4 349 59.9
PGSC0003DMG400025437 Solanum tuberosum HOM05D006889 ORTHO05D008614 6.1e-80 302.0 374 51.6
arahy.Tifrunner.gnm1.ann1.T52I9D Arachis hypogaea HOM05D006889 ORTHO05D008614 1.8e-79 300.4 377 52.3
Actinidia31405 Actinidia chinensis HOM05D006889 ORTHO05D008614 1.5e-78 297.4 314 60.2
Os08g0192400 Oryza sativa ssp. japonica HOM05D006889 ORTHO05D008614 3.4e-78 296.2 361 52.6
Hma1.2p1_0164F.1_g073300 Hydrangea macrophylla HOM05D006889 ORTHO05D008614 7.5e-78 295.0 284 63.4
SGA_v2.0_scaffold62G21307 Striga asiatica HOM05D006889 ORTHO05D008614 2.8e-77 293.1 378 50.5
Gohir.D06G150400 Gossypium hirsutum HOM05D006889 ORTHO05D008614 6.3e-77 292.0 285 61.1
Sabra16G0274600 Salix brachista HOM05D006889 ORTHO05D008614 1.8e-76 290.4 406 49.5
arahy.Tifrunner.gnm1.ann1.I4BD9U Arachis hypogaea HOM05D006889 ORTHO05D008614 3.1e-76 289.7 406 47.3
Hund18033 Selenicereus undatus HOM05D006889 ORTHO05D008614 2.0e-75 287.0 374 52.4
MBI14_g11688_MAGBIO Magnolia biondii HOM05D006889 ORTHO05D008614 4.5e-75 285.8 367 52.9
HPP92_000052 Vanilla planifolia HOM05D006889 ORTHO05D008614 4.0e-71 272.7 346 50.9
Nitab4.5_0002651g0040 Nicotiana tabacum HOM05D006889 ORTHO05D008614 2.6e-70 270.0 360 50.3
unitig_747.g21800 Utricularia gibba HOM05D006889 ORTHO05D008614 4.1e-68 262.7 350 51.7
Sc08g0005450 Simmondsia chinensis HOM05D006889 ORTHO05D008614 7.0e-68 261.9 293 55.3
ATR0081G022 Amborella trichopoda HOM05D006889 ORTHO05D008614 9.2e-68 261.5 290 54.8
CAN.G186.71 Capsicum annuum HOM05D006889 ORTHO05D008614 7.3e-65 251.9 347 49.0
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 1.2e-62 244.6 346 54.3
Zm00001eb260210 Zea mays HOM05D006889 ORTHO05D008614 7.5e-62 241.9 363 44.6
EL10Ac8g18884 Beta vulgaris HOM05D006889 ORTHO05D008614 2.9e-61 240.0 402 43.8
Nitab4.5_0000930g0060 Nicotiana tabacum HOM05D006889 ORTHO05D008614 3.7e-61 239.6 362 46.4
Rhsim09G0213900 Rhododendron simsii HOM05D006889 ORTHO05D008614 2.3e-55 220.3 367 44.7
Lsat_1_v5_gn_2_107601 Lactuca sativa HOM05D006889 ORTHO05D008614 3.4e-54 216.5 356 44.7
Rhsim01G0067600 Rhododendron simsii HOM05D006889 ORTHO05D008614 7.5e-54 215.3 360 44.2
AUR62028393 Chenopodium quinoa HOM05D006889 ORTHO05D008614 4.6e-51 206.1 411 44.8
Peaxi162Scf00135g00913 Petunia axillaris HOM05D006889 ORTHO05D008614 4.7e-48 196.1 318 44.7
TPR.G11931 Trifolium pratense HOM05D006889 ORTHO05D008614 6.8e-47 192.2 352 43.2
MELO3C005447.2 Cucumis melo HOM05D006889 ORTHO05D008614 4.4e-46 189.5 266 51.1
DCAR_030020 Daucus carota HOM05D006889 ORTHO05D008614 8.4e-45 185.3 273 52.4
Pp3c14_17650 Physcomitrium patens HOM05D006889 ORTHO05D008614 4.6e-43 179.5 299 44.5
SMO165G0047 Selaginella moellendorffii HOM05D006889 ORTHO05D008614 5.6e-41 172.6 277 48.7
SEGI_12666 Sequoiadendron giganteum HOM05D006889 ORTHO05D008614 1.6e-40 171.0 150 58.0
AUR62039766 Chenopodium quinoa HOM05D006889 ORTHO05D008614 5.8e-38 162.5 260 46.5
Mapoly0001s0482 Marchantia polymorpha HOM05D006889 ORTHO05D008614 5.8e-38 162.5 139 58.3
SEGI_10499 Sequoiadendron giganteum HOM05D006889 ORTHO05D008614 2.2e-37 160.6 273 41.8
CBR_g38961 Chara braunii HOM05D006889 ORTHO05D008614 8.4e-37 158.7 341 36.4
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 1.3e-34 151.4 327 40.1
Gohir.D08G083500 Gossypium hirsutum HOM05D006889 ORTHO05D008614 4.9e-29 132.9 116 69.0
TPR.G8913 Trifolium pratense HOM05D006889 ORTHO05D008614 5.4e-28 129.4 88 78.4
Gorai.004G087700 Gossypium raimondii HOM05D006889 ORTHO05D008614 1.1e-25 121.7 139 58.3
SHI02511 Sapria himalayana HOM05D006889 ORTHO05D008614 9.9e-22 108.6 70 84.3
FAN28G2910 Fragaria x ananassa HOM05D006889 ORTHO05D008614 2.4e-20 104.0 125 55.2
TPR.G34755 Trifolium pratense HOM05D006889 ORTHO05D008614 3.2e-20 103.6 62 87.1
ClCG01G004860 Citrullus lanatus HOM05D006889 ORTHO05D008614 4.2e-20 103.2 197 59.4
PRCOL_00000609 Prasinoderma coloniale HOM05D006889 ORTHO05D008614 2.2e-13 80.9 120 41.7
MCO15G439 Micromonas commoda HOM05D006889 ORTHO05D008614 8.4e-13 79.0 294 31.3
SHI02510 Sapria himalayana HOM05D006889 ORTHO05D008614 1.8e-10 71.2 47 72.3
Cre17.g728200 Chlamydomonas reinhardtii HOM05D006889 ORTHO05D008614 2.3e-10 70.9 301 30.9
TPR.G34759 Trifolium pratense HOM05D006889 ORTHO05D008614 1.4e-07 61.6 99 38.4
Cfa024449 Carpinus fangiana HOM05D006889 ORTHO05D008614 3.4e-06 57.0 68 42.6


User provided reference genes

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