Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 3.4e-135 485.0 239 100.0
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.8e-123 446.0 241 92.5
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.1e-112 410.2 245 86.9
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.3e-94 350.1 261 75.1
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.8e-94 348.6 261 74.7
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 8.5e-94 347.4 261 74.3
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 8.5e-94 347.4 261 75.1
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.5e-93 345.9 261 74.3
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.5e-93 345.9 261 74.3
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 9.8e-90 334.0 241 71.0
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 2.7e-87 325.9 256 67.2
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 2.9e-86 322.4 241 70.5
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 1.1e-85 320.5 241 69.7
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.1e-85 320.5 215 74.4
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.3e-85 318.9 215 74.0
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 7.2e-85 317.8 236 70.3
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 1.2e-84 317.0 223 70.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.1e-84 316.2 215 73.0
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 3.6e-84 315.5 220 73.6
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.6e-84 315.5 246 66.7
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 6.1e-84 314.7 253 64.8
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 8.9e-83 310.8 215 73.5
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 4.4e-82 308.5 229 70.7
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 5.7e-82 308.1 216 71.3
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 7.5e-82 307.8 242 66.5
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 9.8e-82 307.4 219 70.8
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 6.3e-81 304.7 217 71.4
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 8.3e-81 304.3 215 71.2
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 1.8e-80 303.1 251 63.3
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.8e-80 303.1 241 66.4
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.4e-80 302.8 238 67.6
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.4e-80 302.8 247 65.2
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 5.4e-80 301.6 250 64.4
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 7.0e-80 301.2 213 69.5
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 7.0e-80 301.2 206 72.3
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 9.2e-80 300.8 217 69.6
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.6e-79 300.1 221 68.8
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.7e-79 299.3 223 68.2
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 2.7e-79 299.3 215 69.3
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 2.7e-79 299.3 207 71.0
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 3.5e-79 298.9 216 70.4
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.9e-79 298.1 241 65.6
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.0e-78 297.4 216 69.0
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.3e-78 296.2 223 65.9
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 2.3e-78 296.2 198 74.2
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 2.3e-78 296.2 221 68.8
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 8.6e-78 294.3 197 73.6
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.5e-77 293.5 215 70.2
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 9.5e-77 290.8 224 66.5
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 9.5e-77 290.8 224 66.5
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 9.5e-77 290.8 215 69.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.8e-76 289.3 246 62.6
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.6e-76 288.9 202 70.3
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.8e-75 286.6 253 63.2
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 3.0e-75 285.8 203 71.4
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 6.8e-75 284.6 220 65.9
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 8.9e-75 284.3 226 63.7
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 2.6e-74 282.7 250 60.4
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 3.4e-74 282.3 217 65.9
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 5.8e-74 281.6 220 64.1
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.7e-73 280.0 246 59.3
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.2e-73 279.6 244 59.4
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.2e-73 279.6 251 59.0
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 6.4e-73 278.1 214 66.8
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.1e-72 277.3 225 62.7
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.4e-72 276.9 202 67.8
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.1e-72 275.4 275 56.0
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 1.2e-71 273.9 238 58.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.2e-71 273.9 239 58.2
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 1.2e-71 273.9 208 65.9
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 1.2e-71 273.9 203 69.0
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 7.8e-71 271.2 220 65.5
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.0e-70 270.8 280 53.6
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 1.3e-70 270.4 223 63.7
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.7e-70 270.0 204 67.2
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 5.0e-70 268.5 223 63.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 6.6e-70 268.1 199 66.3
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 8.6e-70 267.7 219 65.3
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 8.6e-70 267.7 219 65.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 8.6e-70 267.7 262 54.6
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.1e-69 267.3 215 62.8
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 1.5e-69 266.9 204 64.2
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 4.3e-69 265.4 254 57.1
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.8e-68 262.7 216 61.6
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 2.8e-68 262.7 202 64.4
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 3.6e-68 262.3 202 64.4
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.2e-68 261.5 233 57.5
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 2.3e-67 259.6 216 63.0
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.3e-67 259.6 222 62.2
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 3.1e-67 259.2 219 63.0
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 3.1e-67 259.2 222 62.2
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 3.1e-67 259.2 215 60.5
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 6.8e-67 258.1 256 57.0
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 6.8e-67 258.1 222 61.7
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 6.8e-67 258.1 256 57.0
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 2.0e-66 256.5 295 49.5
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.6e-66 256.1 266 52.6
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 2.9e-65 252.7 243 56.0
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 3.7e-65 252.3 222 60.4
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 6.4e-65 251.5 223 60.1
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.1e-64 250.8 217 57.6
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 2.4e-64 249.6 238 58.0
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 4.1e-64 248.8 162 73.5
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.6e-62 241.1 247 52.2
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 4.7e-60 235.3 214 57.9
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 6.2e-60 235.0 223 56.5
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.1e-59 234.2 284 46.5
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 2.6e-58 229.6 240 53.8
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 1.4e-56 223.8 195 59.5
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.4e-51 207.2 247 47.0
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 3.9e-46 189.1 226 47.8
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 8.1e-36 154.8 186 43.0
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.8e-35 153.7 116 65.5
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.2e-34 151.0 199 37.7
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 5.6e-29 132.1 151 40.4
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 6.7e-22 108.6 206 34.0
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 2.0e-18 97.1 100 51.0
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 2.1e-15 87.0 99 49.5


User provided reference genes

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