Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 0.0e+00 2375.9 1199 100.0
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 0.0e+00 1961.4 1203 84.0
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 0.0e+00 1558.9 1221 69.5
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.9e-295 1019.6 1252 50.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 3.1e-293 1012.3 1258 50.1
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 5.3e-285 984.9 1253 49.2
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.2e-278 963.0 1258 48.6
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 4.8e-278 961.8 1150 52.1
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 4.8e-193 679.5 1247 38.3
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 1.0e-174 618.6 1255 37.4
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 1.5e-170 604.7 1254 36.9
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 9.1e-152 542.3 1261 34.7
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.8e-137 494.2 1242 33.3
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 7.2e-133 479.6 1257 33.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 8.8e-131 472.6 1295 33.6
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 4.1e-128 463.8 1245 33.4
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 5.0e-126 456.8 1309 30.9
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.5e-117 427.9 1241 32.9
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 3.7e-113 414.1 1255 32.3
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 4.7e-108 397.1 956 34.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 6.2e-108 396.7 1347 29.8
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 6.8e-107 393.3 1307 30.6
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 2.6e-106 391.3 1235 31.7
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.7e-105 387.5 1245 31.4
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 6.0e-103 380.2 596 43.6
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 1.4e-96 359.0 893 34.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.3e-93 347.4 957 32.8
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 5.6e-93 347.1 1035 32.7
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 1.7e-86 325.5 1131 30.2
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 1.1e-85 322.8 1195 29.1
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.5e-85 322.4 968 32.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.1e-84 318.5 1189 28.9
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 3.6e-84 317.8 1248 28.9
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.1e-83 316.2 945 32.5
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 6.9e-83 313.5 981 31.4
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 9.9e-74 283.1 972 29.5
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.4e-72 279.3 920 31.3
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.0e-70 271.6 977 29.2
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 1.9e-69 268.9 938 29.2
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 4.0e-67 261.2 913 30.3
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 2.0e-66 258.8 1004 29.6
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 3.8e-65 254.6 1150 28.2
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 1.1e-64 253.1 1145 28.1
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 1.1e-64 253.1 1023 28.9
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 1.8e-59 235.7 1263 26.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 1.5e-58 232.6 935 28.9
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 3.4e-58 231.5 1190 27.6
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 1.3e-57 229.6 1153 26.2
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 1.9e-56 225.7 1070 27.5
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 5.5e-56 224.2 724 30.4
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 5.1e-54 217.6 1105 27.3
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 8.7e-54 216.9 689 30.9
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 4.3e-53 214.5 1156 26.7
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 2.1e-52 212.2 1146 26.1
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 6.3e-52 210.7 943 27.6
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 3.1e-51 208.4 934 25.3
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 6.9e-51 207.2 983 28.6
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 9.0e-51 206.8 584 30.7
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 9.0e-51 206.8 830 28.0
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 3.4e-50 204.9 909 29.3
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.2e-48 198.0 1112 26.3
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 4.2e-48 198.0 1112 26.3
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 3.6e-47 194.9 905 28.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.3e-46 193.0 930 28.4
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 1.6e-44 186.0 1236 24.9
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 6.3e-44 184.1 949 27.1
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 8.2e-44 183.7 907 27.6
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 2.2e-41 175.6 941 26.5
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 1.6e-39 169.5 1103 26.6
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 4.6e-39 167.9 1063 25.2
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 8.8e-38 163.7 505 31.7
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 8.8e-38 163.7 1044 25.1
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.1e-37 163.3 948 24.4
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 1.1e-37 163.3 447 31.5
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.5e-37 162.9 1153 24.9
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 9.7e-37 160.2 934 26.4
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 9.7e-37 160.2 715 29.7
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 2.2e-36 159.1 907 25.5
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 1.8e-35 156.0 940 25.6
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 4.1e-35 154.8 994 25.4
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 3.4e-34 151.8 965 25.9
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.1e-32 146.7 961 26.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.6e-31 141.7 964 26.3
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 3.9e-30 138.3 1262 24.7
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 2.6e-29 135.6 1324 24.3
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.8e-28 132.1 460 30.2
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 2.4e-27 129.0 1000 25.0
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 7.0e-27 127.5 869 24.3
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 2.0e-26 125.9 1276 23.8
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 1.2e-23 116.7 1328 23.2
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.2e-23 116.7 1330 23.4
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 6.1e-23 114.4 879 24.1
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 1.2e-21 110.2 1051 26.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.2e-20 105.9 1003 23.3
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 2.2e-20 105.9 687 26.8
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 4.1e-19 101.7 430 28.8
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 7.0e-19 100.9 1282 23.9
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 2.7e-18 99.0 784 24.4
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 5.9e-18 97.8 407 27.0
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.0e-17 97.1 190 36.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.7e-17 96.3 404 28.7
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 1.1e-16 93.6 332 29.5
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 1.1e-16 93.6 393 28.2
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 2.5e-16 92.4 505 25.7
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 5.5e-16 91.3 1115 21.9
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.6e-15 88.6 556 26.1
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 4.7e-15 88.2 325 29.2
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 1.4e-14 86.7 133 42.1
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.8e-14 86.3 1007 23.6
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 5.2e-14 84.7 216 35.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 6.8e-14 84.3 347 28.2
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 6.8e-14 84.3 347 28.2
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 2.0e-13 82.8 229 29.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 4.4e-13 81.6 181 34.3
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 3.7e-12 78.6 190 35.8
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 3.7e-12 78.6 535 24.7
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 3.7e-12 78.6 1003 22.1
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 4.8e-12 78.2 400 25.2
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 4.8e-12 78.2 228 30.7
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 4.8e-12 78.2 354 26.0
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 4.8e-12 78.2 228 30.7
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 4.8e-12 78.2 228 30.7
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 4.8e-12 78.2 354 26.0
Cpa.g.sc37.109 Carica papaya HOM05D011672 ORTHO05D012736 1.1e-11 77.0 214 28.5
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 2.4e-11 75.9 335 27.8
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 5.4e-11 74.7 222 32.0
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 5.4e-11 74.7 328 28.7
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 5.4e-11 74.7 328 28.7
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 7.0e-11 74.3 828 23.1
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 9.1e-11 73.9 323 29.1
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 9.1e-11 73.9 323 29.1
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.2e-10 73.6 918 22.1
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 2.7e-10 72.4 328 28.7
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 2.7e-10 72.4 342 28.4
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 4.5e-10 71.6 375 26.7
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 4.5e-10 71.6 695 24.7
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 7.7e-10 70.9 344 28.5
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 1.7e-09 69.7 456 23.5
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 1.7e-09 69.7 421 25.9
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.3e-09 69.3 314 26.1
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 3.8e-09 68.6 256 25.0
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 5.0e-09 68.2 279 29.4
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 6.5e-09 67.8 346 27.5
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.9e-08 66.2 841 23.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.2e-08 65.5 228 27.2
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 5.5e-08 64.7 473 23.9
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 7.2e-08 64.3 409 24.2
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 1.2e-07 63.5 455 22.6
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 4.7e-07 61.6 130 35.4
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 6.1e-07 61.2 182 31.9
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 8.0e-07 60.8 879 22.6
CDE04G2546 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 1.4e-06 60.1 920 22.0
HPP92_003258 Vanilla planifolia HOM05D006657 ORTHO05D005964 2.3e-06 59.3 425 21.6
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 6.8e-06 57.8 322 25.5
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 8.8e-06 57.4 942 19.4


User provided reference genes

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