Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 1.1e-156 556.6 275 100.0
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 4.1e-132 474.9 267 87.6
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 2.1e-120 436.0 288 79.5
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 6.1e-112 407.9 287 73.5
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 5.9e-107 391.3 274 73.0
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.0e-103 380.6 279 72.4
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 6.8e-103 377.9 278 71.9
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.9e-98 362.1 276 70.7
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.5e-97 360.1 278 70.1
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 6.4e-93 344.7 282 66.0
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 1.3e-90 337.0 268 67.2
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 1.5e-89 333.6 289 61.2
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.9e-89 333.2 290 63.1
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 2.1e-88 329.7 276 64.5
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 3.6e-88 328.9 298 59.4
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 8.1e-88 327.8 291 59.8
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 3.1e-87 325.9 292 58.9
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 3.1e-87 325.9 269 61.7
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 8.9e-87 324.3 261 65.9
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 1.5e-86 323.6 288 62.5
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.6e-86 322.8 224 69.6
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 3.4e-86 322.4 269 62.1
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 2.9e-85 319.3 267 61.8
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 2.9e-85 319.3 275 61.8
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.4e-84 317.0 274 60.6
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 2.4e-84 316.2 300 60.3
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 2.4e-84 316.2 294 59.2
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 7.1e-84 314.7 284 59.9
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 7.1e-84 314.7 258 61.2
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 2.1e-83 313.2 292 58.2
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 2.1e-83 313.2 285 58.6
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 3.5e-83 312.4 285 58.2
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 4.6e-83 312.0 301 59.1
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 6.0e-83 311.6 255 65.1
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.3e-82 310.5 287 57.8
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 2.3e-82 309.7 301 56.8
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 3.9e-82 308.9 298 56.4
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 1.9e-81 306.6 260 64.6
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 1.9e-81 306.6 286 60.5
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 2.5e-81 306.2 261 61.7
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 3.3e-81 305.8 282 58.9
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 3.3e-81 305.8 280 59.6
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 5.6e-81 305.1 282 58.9
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 3.6e-80 302.4 270 60.0
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 4.7e-80 302.0 290 57.9
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 4.7e-80 302.0 286 60.5
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 8.1e-80 301.2 264 60.2
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.4e-79 300.4 285 58.2
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.4e-79 300.4 261 61.3
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 3.1e-79 299.3 263 57.8
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.0e-79 298.9 283 57.6
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 5.2e-79 298.5 256 58.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 5.2e-79 298.5 281 57.7
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 6.8e-79 298.1 285 55.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.5e-78 297.0 270 60.7
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.0e-78 296.6 256 61.7
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 2.0e-78 296.6 261 60.5
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 4.4e-78 295.4 283 56.9
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 7.6e-78 294.7 220 66.8
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.3e-77 293.9 270 60.4
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 2.2e-77 293.1 272 58.1
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 3.7e-77 292.4 220 66.4
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 6.4e-77 291.6 297 53.5
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 8.4e-77 291.2 293 57.0
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 8.4e-77 291.2 291 57.7
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.1e-76 290.8 270 59.3
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 1.4e-76 290.4 268 57.1
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 1.9e-76 290.0 293 56.3
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 2.4e-76 289.7 222 66.7
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 7.1e-76 288.1 213 69.5
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 1.2e-75 287.3 296 54.7
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 1.2e-75 287.3 276 58.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.1e-75 286.6 221 65.2
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 2.7e-75 286.2 292 55.5
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 7.8e-75 284.6 213 65.7
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.3e-74 283.9 316 52.8
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 3.9e-74 282.3 292 55.8
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 5.1e-74 282.0 207 67.1
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 6.6e-74 281.6 277 56.7
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.1e-73 280.8 203 66.5
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 1.1e-73 280.8 292 52.7
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.5e-73 280.4 270 58.1
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 1.9e-73 280.0 292 54.5
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 2.5e-73 279.6 265 57.4
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 7.3e-73 278.1 207 66.2
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.2e-72 277.3 269 55.4
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 6.2e-72 275.0 214 64.5
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 1.1e-71 274.2 212 63.2
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 1.5e-70 270.4 287 53.3
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 2.0e-70 270.0 287 54.4
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 2.0e-70 270.0 293 52.2
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 4.4e-70 268.9 212 61.8
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 5.8e-70 268.5 295 52.2
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 1.3e-69 267.3 294 52.4
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.3e-69 267.3 206 64.1
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.7e-69 266.9 298 53.4
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 4.9e-69 265.4 292 53.4
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 4.9e-69 265.4 292 53.4
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 4.9e-69 265.4 301 52.2
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-68 263.5 202 65.3
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 1.9e-68 263.5 202 65.3
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 1.6e-67 260.4 207 63.8
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 1.6e-67 260.4 207 63.8
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 1.3e-66 257.3 271 53.9
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 2.5e-65 253.1 202 61.9
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 1.4e-63 247.3 203 60.6
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 1.8e-63 246.9 213 59.2
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 2.1e-59 233.4 202 55.9
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 6.0e-59 231.9 198 61.1
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 7.3e-57 224.9 231 55.8
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 1.4e-55 220.7 210 56.7
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 4.5e-54 215.7 195 52.3
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 4.2e-52 209.1 199 56.3
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 1.5e-46 190.7 208 51.4
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 4.9e-45 185.7 166 59.0
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.5e-44 182.2 173 55.5
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 6.0e-43 178.7 208 45.7
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 3.0e-42 176.4 220 50.5
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 2.5e-41 173.3 205 52.7
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 9.6e-41 171.4 233 40.8
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 8.2e-40 168.3 212 44.3
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.9e-37 159.8 205 43.9
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 1.8e-34 150.6 126 61.9
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 4.8e-32 142.5 207 43.5
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.7e-27 126.7 110 58.2
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 2.8e-24 116.7 120 54.2
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 2.1e-19 100.5 144 39.6
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 3.0e-18 96.7 56 75.0
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 5.7e-17 92.4 200 35.5
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.8e-16 90.1 209 34.9
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.8e-15 87.4 50 74.0
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 3.5e-14 83.2 78 55.1
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 2.2e-13 80.5 74 51.4
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 5.0e-13 79.3 87 48.3


User provided reference genes

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