Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 1.6e-192 676.0 367 100.0
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 9.9e-150 533.9 372 82.5
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 8.7e-106 387.9 414 62.1
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.7e-77 293.9 376 54.5
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 5.7e-73 278.9 375 49.9
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 9.1e-71 271.6 364 49.7
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.5e-70 269.2 364 49.7
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-68 264.6 365 49.3
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.5e-65 254.2 363 51.2
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 8.3e-56 221.9 376 46.5
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 7.3e-52 208.8 375 45.6
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.4e-50 204.5 376 44.9
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 5.2e-50 202.6 376 42.0
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 2.2e-48 197.2 377 43.5
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 5.4e-47 192.6 381 41.7
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 9.2e-47 191.8 381 43.6
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 1.0e-45 188.3 368 41.8
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 3.0e-45 186.8 382 44.8
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.3e-44 183.3 355 44.5
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 5.6e-44 182.6 385 35.8
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.1e-43 180.6 376 38.6
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 3.6e-43 179.9 374 36.1
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 3.7e-40 169.9 372 38.4
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 3.7e-40 169.9 330 43.3
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 2.4e-39 167.2 372 38.2
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 2.4e-39 167.2 350 38.6
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 4.1e-39 166.4 361 39.6
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 7.1e-39 165.6 363 41.6
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.2e-38 164.9 361 40.7
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.6e-38 164.5 285 42.8
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 3.5e-38 163.3 381 34.9
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 3.9e-37 159.8 371 40.4
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.9e-36 157.5 276 40.2
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.9e-36 157.5 276 40.2
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.9e-36 157.5 276 40.2
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 2.5e-36 157.1 346 37.9
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 4.3e-36 156.4 342 37.7
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 7.3e-36 155.6 382 34.8
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 8.1e-35 152.1 384 35.7
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 4.0e-34 149.8 383 33.9
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 3.8e-32 143.3 291 38.5
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 6.4e-32 142.5 310 37.1
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.4e-31 141.4 382 34.0
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 2.1e-30 137.5 340 38.8
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 3.9e-29 133.3 363 32.5
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 7.3e-28 129.0 277 37.2
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.2e-27 128.3 259 37.1
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.8e-26 124.4 342 33.3
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 9.0e-26 122.1 365 31.0
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 9.0e-26 122.1 366 31.4
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.5e-25 121.3 283 36.4
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 1.5e-25 121.3 373 32.7
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 3.4e-25 120.2 443 28.7
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.4e-25 119.8 279 39.8
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 9.9e-25 118.6 281 34.5
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 1.3e-24 118.2 353 31.2
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 1.7e-24 117.9 294 36.7
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 2.9e-24 117.1 386 33.4
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 3.8e-24 116.7 174 47.1
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 4.9e-24 116.3 277 32.5
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 6.4e-24 115.9 268 35.4
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 1.4e-23 114.8 383 29.2
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 1.9e-23 114.4 286 36.7
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 3.2e-23 113.6 255 37.6
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 5.4e-23 112.8 251 39.0
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 5.4e-23 112.8 284 35.6
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 5.4e-23 112.8 242 35.5
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 5.4e-23 112.8 286 36.4
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 7.1e-23 112.5 283 36.4
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 1.2e-22 111.7 258 42.2
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 3.5e-22 110.2 268 35.4
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 3.5e-22 110.2 256 40.2
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 4.6e-22 109.8 239 34.7
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 4.6e-22 109.8 367 31.9
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 4.6e-22 109.8 369 33.1
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.0e-21 108.6 259 32.0
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 1.7e-21 107.8 297 33.0
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 2.3e-21 107.5 281 36.7
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 3.9e-21 106.7 358 31.6
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 5.1e-21 106.3 276 35.1
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 8.7e-21 105.5 246 34.6
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 1.1e-20 105.1 247 34.8
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 1.5e-20 104.8 364 32.4
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.5e-20 104.8 272 33.8
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 2.5e-20 104.0 270 34.4
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 2.5e-20 104.0 259 32.0
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 3.3e-20 103.6 253 32.4
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 3.3e-20 103.6 282 33.3
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 3.3e-20 103.6 247 32.4
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 5.6e-20 102.8 246 34.1
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 1.3e-19 101.7 251 34.7
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.6e-19 101.3 250 32.0
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 5.3e-18 96.3 268 32.8
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 9.9e-17 92.0 235 33.6
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.7e-16 91.3 265 30.9
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 3.8e-16 90.1 329 28.0
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 8.4e-16 89.0 238 33.6
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 2.4e-15 87.4 237 38.0
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 2.3e-13 80.9 235 33.2
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 3.0e-13 80.5 237 32.9
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 3.9e-13 80.1 235 32.8
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 6.7e-13 79.3 273 30.8
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 8.7e-13 79.0 131 43.5
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.5e-12 77.4 260 33.5
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 5.6e-12 76.3 235 31.9
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 1.6e-11 74.7 240 32.9
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 3.1e-10 70.5 198 32.3
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 1.5e-09 68.2 334 26.3
ECA233G2997 Erigeron canadensis HOM05D003457 ORTHO05D009249 6.4e-08 62.8 273 35.2


User provided reference genes

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