Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1297700 Malus domestica HOM05D006482 ORTHO05D008149 5.0e-48 194.1 99 100.0
MD01G1227400 Malus domestica HOM05D006482 ORTHO05D008149 1.3e-27 126.3 99 72.7
FvH4_7g32700 Fragaria vesca HOM05D006482 ORTHO05D008149 3.0e-24 115.2 99 66.7
FAN01G3112 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.0e-24 115.2 99 66.7
FAN03G2872 Fragaria x ananassa HOM05D006482 ORTHO05D008149 3.0e-24 115.2 99 66.7
Prupe.2G317400 Prunus persica HOM05D006482 ORTHO05D008149 1.5e-23 112.8 99 66.7
RcHm_v2.0_Chr1g0382671 Rosa chinensis HOM05D006482 ORTHO05D008149 1.5e-23 112.8 99 66.7
CANSAT21G0227 Cannabis sativa HOM05D006482 ORTHO05D008149 1.3e-19 99.8 99 58.6
PGR142G0199 Punica granatum HOM05D006482 ORTHO05D008149 2.9e-19 98.6 99 56.6
Duzib068G1219 Durio zibethinus HOM05D006482 ORTHO05D008149 4.9e-19 97.8 99 61.6
QL05p036199 Quercus lobata HOM05D006482 ORTHO05D008149 4.9e-19 97.8 98 61.2
Manes.01G041500 Manihot esculenta HOM05D006482 ORTHO05D008149 6.4e-19 97.4 99 57.6
Atru.chr12.2369 Acer truncatum HOM05D006482 ORTHO05D008149 8.3e-19 97.1 99 59.6
CSS0017170 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.4e-18 94.4 99 55.6
Potri.012G022900 Populus trichocarpa HOM05D006482 ORTHO05D008149 5.4e-18 94.4 99 56.6
QL09p007382 Quercus lobata HOM05D006482 ORTHO05D008149 5.4e-18 94.4 142 47.2
Sabra12G0010900 Salix brachista HOM05D006482 ORTHO05D008149 9.2e-18 93.6 132 44.7
Thecc.03G206900 Theobroma cacao HOM05D006482 ORTHO05D008149 9.2e-18 93.6 99 57.6
Ciclev10023193m.g Citrus clementina HOM05D006482 ORTHO05D008149 2.0e-17 92.4 99 57.6
AL8G28600 Arabidopsis lyrata HOM05D006482 ORTHO05D008149 2.7e-17 92.0 99 55.6
Gohir.A08G103900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.7e-17 92.0 99 58.6
GSVIVG01038627001 Vitis vinifera HOM05D006482 ORTHO05D008149 2.7e-17 92.0 99 56.6
Carub.0008s1398 Capsella rubella HOM05D006482 ORTHO05D008149 7.8e-17 90.5 99 54.5
Gohir.D08G115300 Gossypium hirsutum HOM05D006482 ORTHO05D008149 7.8e-17 90.5 99 57.6
Gorai.004G124200 Gossypium raimondii HOM05D006482 ORTHO05D008149 7.8e-17 90.5 99 57.6
Rhsim03G0214200 Rhododendron simsii HOM05D006482 ORTHO05D008149 7.8e-17 90.5 99 51.5
COL.COLO4_14353 Corchorus olitorius HOM05D006482 ORTHO05D008149 1.0e-16 90.1 99 55.6
Duzib205G0332 Durio zibethinus HOM05D006482 ORTHO05D008149 1.0e-16 90.1 99 56.6
Potri.015G006500 Populus trichocarpa HOM05D006482 ORTHO05D008149 1.0e-16 90.1 99 54.5
AUR62035606 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.3e-16 89.7 104 55.8
Sabra15G0004500 Salix brachista HOM05D006482 ORTHO05D008149 1.3e-16 89.7 99 54.5
Aa31LG3G9780 Aethionema arabicum HOM05D006482 ORTHO05D008149 1.7e-16 89.4 99 53.5
EL10Ac3g05199 Beta vulgaris HOM05D006482 ORTHO05D008149 1.7e-16 89.4 99 53.5
Thhalv10015198m.g Eutrema salsugineum HOM05D006482 ORTHO05D008149 1.7e-16 89.4 99 53.5
Sp6g15770 Schrenkiella parvula HOM05D006482 ORTHO05D008149 1.7e-16 89.4 99 53.5
AT5G53650 Arabidopsis thaliana HOM05D006482 ORTHO05D008149 2.3e-16 89.0 99 53.5
A03p15030 Brassica napus HOM05D006482 ORTHO05D008149 2.3e-16 89.0 97 53.6
BraA03t10797Z Brassica rapa HOM05D006482 ORTHO05D008149 2.3e-16 89.0 97 53.6
TAR374G1512 Trochodendron aralioides HOM05D006482 ORTHO05D008149 3.0e-16 88.6 99 54.5
Ah.13g070630 Amaranthus hybridus HOM05D006482 ORTHO05D008149 3.9e-16 88.2 100 55.0
TWI39G0373 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 3.9e-16 88.2 99 52.5
Eucgr.K00422 Eucalyptus grandis HOM05D006482 ORTHO05D008149 5.0e-16 87.8 99 53.5
C03p17520 Brassica napus HOM05D006482 ORTHO05D008149 6.6e-16 87.4 97 52.6
BolC3t14165H Brassica oleracea HOM05D006482 ORTHO05D008149 6.6e-16 87.4 97 52.6
THA.LOC109117152 Tarenaya hassleriana HOM05D006482 ORTHO05D008149 8.6e-16 87.0 95 56.8
TWI14G0741 Tripterygium wilfordii HOM05D006482 ORTHO05D008149 8.6e-16 87.0 93 53.8
arahy.Tifrunner.gnm1.ann1.ZIU4UI Arachis hypogaea HOM05D006482 ORTHO05D008149 1.1e-15 86.7 99 51.5
BcaC01g06263 Brassica carinata HOM05D006482 ORTHO05D008149 1.1e-15 86.7 97 52.6
CARHR266810 Cardamine hirsuta HOM05D006482 ORTHO05D008149 1.1e-15 86.7 99 51.5
Nn3g18841 Nelumbo nucifera HOM05D006482 ORTHO05D008149 1.1e-15 86.7 99 55.6
Psat5g073480 Pisum sativum HOM05D006482 ORTHO05D008149 1.1e-15 86.7 99 53.5
arahy.Tifrunner.gnm1.ann1.CVH3M3 Arachis hypogaea HOM05D006482 ORTHO05D008149 1.5e-15 86.3 99 51.5
BcaB01g04252 Brassica carinata HOM05D006482 ORTHO05D008149 1.9e-15 85.9 97 51.5
Hma1.2p1_0456F.1_g156710 Hydrangea macrophylla HOM05D006482 ORTHO05D008149 1.9e-15 85.9 99 54.5
Hund21041 Selenicereus undatus HOM05D006482 ORTHO05D008149 1.9e-15 85.9 92 54.3
Lalb_Chr23g0271851 Lupinus albus HOM05D006482 ORTHO05D008149 2.5e-15 85.5 99 52.5
Gorai.008G265700 Gossypium raimondii HOM05D006482 ORTHO05D008149 3.3e-15 85.1 99 54.5
Phvul.009G047100 Phaseolus vulgaris HOM05D006482 ORTHO05D008149 3.3e-15 85.1 99 52.5
Lj1g0026941 Lotus japonicus HOM05D006482 ORTHO05D008149 4.3e-15 84.7 99 52.5
PSO063G1999 Papaver somniferum HOM05D006482 ORTHO05D008149 4.3e-15 84.7 99 52.5
Dinv29224 Davidia involucrata HOM05D006482 ORTHO05D008149 5.6e-15 84.3 90 55.6
Dinv18742 Davidia involucrata HOM05D006482 ORTHO05D008149 7.3e-15 84.0 90 54.4
Glyma.04G230700 Glycine max HOM05D006482 ORTHO05D008149 7.3e-15 84.0 99 50.5
Medtr3g092270 Medicago truncatula HOM05D006482 ORTHO05D008149 9.5e-15 83.6 92 54.3
Oeu010737.1 Olea europaea HOM05D006482 ORTHO05D008149 1.2e-14 83.2 99 49.5
CiPaw.05G203100 Carya illinoinensis HOM05D006482 ORTHO05D008149 1.6e-14 82.8 99 52.5
Actinidia27284 Actinidia chinensis HOM05D000567 ORTHO05D000767 4.7e-14 81.3 99 51.5
Gohir.A12G246900 Gossypium hirsutum HOM05D006482 ORTHO05D008149 6.2e-14 80.9 99 51.5
Lalb_Chr11g0067291 Lupinus albus HOM05D006482 ORTHO05D008149 6.2e-14 80.9 98 49.0
TPR.G14847 Trifolium pratense HOM05D006482 ORTHO05D008149 6.2e-14 80.9 89 52.8
TAR629G1047 Trochodendron aralioides HOM05D006482 ORTHO05D008149 6.2e-14 80.9 99 51.5
BcaB05g22064 Brassica carinata HOM05D006482 ORTHO05D008149 8.1e-14 80.5 92 51.1
Nitab4.5_0008141g0050 Nicotiana tabacum HOM05D006482 ORTHO05D008149 8.1e-14 80.5 98 48.0
Hund09702 Selenicereus undatus HOM05D006482 ORTHO05D008149 8.1e-14 80.5 99 49.5
Migut.E00300 Erythranthe guttata HOM05D006482 ORTHO05D008149 1.1e-13 80.1 100 53.0
BraA02t06158Z Brassica rapa HOM05D006482 ORTHO05D008149 1.8e-13 79.3 92 50.0
vmacro06428 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 1.8e-13 79.3 99 48.5
Sc13g0010170 Simmondsia chinensis HOM05D006482 ORTHO05D008149 2.3e-13 79.0 99 47.5
ECA233G2670 Erigeron canadensis HOM05D006482 ORTHO05D008149 3.1e-13 78.6 99 49.5
Sed0025475 Sechium edule HOM05D006482 ORTHO05D008149 3.1e-13 78.6 99 48.5
BcaC03g14399 Brassica carinata HOM05D006482 ORTHO05D008149 5.2e-13 77.8 92 48.9
C02p18140 Brassica napus HOM05D006482 ORTHO05D008149 5.2e-13 77.8 92 48.9
BolC2t07944H Brassica oleracea HOM05D006482 ORTHO05D008149 5.2e-13 77.8 92 48.9
Lsat_1_v5_gn_6_10060 Lactuca sativa HOM05D006482 ORTHO05D008149 5.2e-13 77.8 99 48.5
Nitab4.5_0002720g0020 Nicotiana tabacum HOM05D006482 ORTHO05D008149 5.2e-13 77.8 97 46.4
PGSC0003DMG400012236 Solanum tuberosum HOM05D006482 ORTHO05D008149 8.9e-13 77.0 99 47.5
Sc19g0000660 Simmondsia chinensis HOM05D006482 ORTHO05D008149 1.2e-12 76.6 98 50.0
A02p10930 Brassica napus HOM05D006482 ORTHO05D008149 1.5e-12 76.3 92 48.9
CDE11G0870 Ceratophyllum demersum HOM05D006482 ORTHO05D008149 1.5e-12 76.3 107 45.8
FAN17G0467 Fragaria x ananassa HOM05D006482 ORTHO05D008149 1.5e-12 76.3 41 90.2
Glyma.04G154600 Glycine max HOM05D006482 ORTHO05D008149 3.4e-12 75.1 95 48.4
CDE09G1364 Ceratophyllum demersum HOM05D001294 ORTHO05D001178 4.4e-12 74.7 97 47.4
ClCG01G000130 Citrullus lanatus HOM05D006482 ORTHO05D008149 4.4e-12 74.7 99 47.5
SalBow3G2365 Salvia bowleyana HOM05D006482 ORTHO05D008149 4.4e-12 74.7 100 49.0
CSS0001288 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 5.8e-12 74.3 99 47.5
CsaV3_5G000030 Cucumis sativus L. HOM05D006482 ORTHO05D008149 5.8e-12 74.3 99 48.5
Peaxi162Scf00074g00224 Petunia axillaris HOM05D006482 ORTHO05D008149 7.5e-12 73.9 99 46.5
CiPaw.06G042200 Carya illinoinensis HOM05D006482 ORTHO05D008149 9.9e-12 73.6 99 44.4
HanXRQChr07g0192381 Helianthus annuus HOM05D006482 ORTHO05D008149 9.9e-12 73.6 99 46.5
MELO3C005924.2 Cucumis melo HOM05D006482 ORTHO05D008149 1.3e-11 73.2 99 47.5
CSS0007382 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 1.7e-11 72.8 41 82.9
Glyma.06G134500 Glycine max HOM05D006482 ORTHO05D008149 1.7e-11 72.8 99 46.5
Sopen08g031390 Solanum pennellii HOM05D006482 ORTHO05D008149 1.7e-11 72.8 99 44.4
Solyc08g083200.3 Solanum lycopersicum HOM05D006482 ORTHO05D008149 2.2e-11 72.4 99 44.4
CSS0018303 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 3.7e-11 71.6 55 67.3
CSS0049934 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 6.4e-11 70.9 99 46.5
vmacro13845 Vaccinium macrocarpon HOM05D006482 ORTHO05D008149 6.4e-11 70.9 46 73.9
CSS0015195 Camellia sinensis var. sinensis HOM05D006482 ORTHO05D008149 8.3e-11 70.5 42 76.2
AUR62006020 Chenopodium quinoa HOM05D006482 ORTHO05D008149 1.4e-10 69.7 46 78.3
Sed0001965 Sechium edule HOM05D006482 ORTHO05D008149 1.4e-10 69.7 95 45.3
unitig_699.g19497 Utricularia gibba HOM05D006482 ORTHO05D008149 1.4e-10 69.7 96 45.8
Gohir.D12G247600 Gossypium hirsutum HOM05D006482 ORTHO05D008149 2.4e-10 68.9 99 47.5
Rhsim07G0077300 Rhododendron simsii HOM05D006482 ORTHO05D008149 2.4e-10 68.9 180 32.8
Haze_00279 Corylus avellana HOM05D006482 ORTHO05D008149 3.2e-10 68.6 41 82.9
Duzib084G1447 Durio zibethinus HOM05D006482 ORTHO05D008149 4.1e-10 68.2 86 52.3
DCAR_006554 Daucus carota HOM05D006482 ORTHO05D008149 1.0e-08 63.5 49 65.3
ATR0579G147 Amborella trichopoda HOM05D006482 ORTHO05D008149 3.0e-08 62.0 42 66.7
FvH4_4g29090 Fragaria vesca HOM05D000768 ORTHO05D046510 3.0e-08 62.0 37 86.5
SEGI_31465 Sequoiadendron giganteum HOM05D006482 ORTHO05D008149 5.1e-08 61.2 86 44.2
Cc08_g16820 Coffea canephora HOM05D006482 ORTHO05D008149 6.6e-08 60.8 97 40.2
FAN22G1213 Fragaria x ananassa HOM05D034724 ORTHO05D202753 1.9e-07 59.3 41 70.7
HPP92_020659 Vanilla planifolia HOM05D001695 ORTHO05D002735 2.8e-06 55.5 98 39.8
Eucgr.E02459 Eucalyptus grandis HOM05D006482 ORTHO05D008149 4.7e-06 54.7 81 44.4
Os05g0535700 Oryza sativa ssp. japonica HOM05D006482 ORTHO05D008149 6.2e-06 54.3 100 37.0


User provided reference genes

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