Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1561.2 847 100.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1416.0 850 90.5
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 0.0e+00 1338.6 860 84.3
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1125.9 858 74.6
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1077.0 854 72.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.7e-310 1066.6 856 71.7
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.4e-308 1060.8 856 71.5
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 5.9e-299 1030.8 856 70.3
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 1.1e-297 1026.5 868 68.7
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.3e-297 1024.6 870 68.7
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 2.0e-291 1005.7 778 73.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.5e-286 989.6 905 64.3
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 2.6e-286 988.8 886 66.3
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.5e-286 987.3 867 66.9
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 7.3e-281 970.7 793 68.5
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.1e-279 966.8 863 65.0
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.0e-278 962.6 860 66.0
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 5.1e-274 948.0 851 63.9
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.4e-271 939.9 854 64.2
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 2.0e-270 936.0 852 65.1
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.4e-268 929.9 908 60.4
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 1.9e-268 929.5 863 62.3
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.3e-266 922.5 874 60.8
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.1e-264 916.0 862 63.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.6e-262 909.1 876 60.8
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.4e-262 908.3 882 62.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 1.3e-261 906.7 871 60.7
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.2e-261 906.0 871 60.2
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.9e-261 905.6 852 63.0
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.4e-260 903.3 878 62.5
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 3.2e-260 902.1 857 62.8
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 7.8e-259 897.5 878 60.0
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 1.0e-258 897.1 838 63.7
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 2.5e-257 892.5 854 59.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-256 889.4 875 60.8
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 3.6e-256 888.6 873 61.4
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.2e-256 887.9 875 61.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.1e-255 885.6 882 61.8
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 9.0e-255 884.0 860 62.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 1.2e-254 883.6 841 61.7
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.3e-253 880.2 836 63.2
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 2.9e-253 879.0 841 60.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.7e-251 872.5 886 57.9
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.0e-251 871.3 878 60.0
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.0e-250 869.0 863 60.3
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.1e-249 867.1 867 59.5
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 9.6e-249 864.0 837 62.4
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 9.3e-244 847.4 934 55.7
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.9e-241 839.7 763 64.9
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.5e-241 839.3 823 61.5
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.5e-241 839.3 882 57.4
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.8e-240 835.9 845 60.9
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 8.2e-240 834.3 820 59.5
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 1.1e-239 833.9 764 64.0
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 4.0e-239 832.0 883 58.3
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 9.0e-239 830.9 832 60.7
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 3.8e-237 825.5 879 58.9
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.5e-236 821.6 883 58.7
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.8e-232 809.3 882 59.0
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.8e-232 808.5 880 57.5
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 6.9e-231 804.7 850 56.4
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 6.5e-229 798.1 880 57.2
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.2e-227 793.9 869 56.7
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.3e-225 785.4 881 56.4
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 9.7e-225 784.3 752 61.7
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 5.3e-223 778.5 883 54.6
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.4e-222 775.8 821 58.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.3e-221 773.9 892 54.8
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 8.5e-221 771.2 862 55.8
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 1.5e-217 760.4 857 55.4
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.8e-216 755.4 835 56.0
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.1e-215 754.2 886 52.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 7.2e-212 741.5 856 54.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.6e-211 739.2 883 55.6
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.8e-210 734.6 883 55.6
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.7e-208 729.2 843 54.3
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-207 727.6 883 55.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.7e-205 720.3 859 53.9
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.5e-204 715.3 869 52.0
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 1.6e-203 713.8 884 53.5
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 1.0e-202 711.1 920 52.1
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.7e-202 708.4 864 53.1
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 6.7e-202 708.4 880 54.0
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-201 707.2 841 51.8
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.3e-200 701.8 660 63.3
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 2.4e-199 699.9 818 55.5
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.0e-197 694.5 868 51.6
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 8.0e-195 684.9 860 53.4
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 2.3e-194 683.3 864 52.5
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 7.0e-191 671.8 778 53.7
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.5e-190 669.5 871 50.1
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.0e-189 667.9 812 53.7
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-187 661.0 851 51.0
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 1.4e-186 657.5 842 52.1
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.0e-186 656.0 681 59.2
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 6.8e-186 655.2 852 52.3
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.2e-185 654.4 870 50.7
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.4e-185 652.9 810 51.0
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.9e-184 649.0 812 51.4
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-182 642.5 872 48.9
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 2.8e-179 633.3 737 53.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.6e-179 632.9 722 55.7
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.2e-176 623.6 851 49.4
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 5.4e-175 619.0 621 58.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 2.5e-172 610.1 856 48.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 2.1e-171 607.1 895 46.7
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 3.5e-166 589.7 807 48.7
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 3.3e-164 583.2 781 49.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 8.1e-163 578.6 781 49.4
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.1e-162 576.6 697 54.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 4.4e-161 572.8 860 46.4
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 3.0e-157 560.1 761 51.2
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-155 554.7 503 65.8
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-155 554.3 746 49.6
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-154 551.6 845 45.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.5e-153 547.7 734 51.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 6.4e-152 542.3 746 50.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 7.1e-151 538.9 768 49.5
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 6.0e-150 535.8 870 42.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.8e-147 526.9 830 44.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 4.4e-145 519.6 866 43.1
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.9e-143 514.2 745 49.3
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 2.4e-143 513.8 785 47.6
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.6e-142 509.6 851 42.8
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.3e-141 508.1 856 42.5
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.1e-131 472.2 817 41.2
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.0e-130 469.9 755 46.0
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 1.5e-124 451.4 759 45.7
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.1e-123 447.6 730 44.8
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.4e-122 444.1 728 45.2
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 7.9e-118 429.1 369 68.8
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.3e-117 427.6 729 44.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 3.9e-117 426.8 730 43.6
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 8.2e-115 419.1 728 43.5
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 6.7e-109 399.4 709 43.0
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 9.7e-108 395.6 317 69.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 9.7e-108 395.6 317 69.1
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.3e-104 385.2 421 53.9
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-93 347.8 301 67.8
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.6e-81 308.5 990 30.8
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-74 285.8 781 34.2
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.6e-73 282.0 662 36.0
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.7e-73 281.2 419 45.1
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.0e-70 269.6 930 32.0
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 7.5e-68 263.1 726 32.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.8e-62 244.6 875 31.3
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.0e-53 214.2 846 28.7
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 2.0e-52 211.8 356 40.2
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 2.3e-48 198.4 144 79.9
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 1.8e-45 188.7 163 62.0
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 2.0e-36 158.7 214 47.7
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 3.4e-36 157.9 135 63.0
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.4e-36 157.9 173 52.6
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 5.8e-36 157.1 147 61.9
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-29 136.0 121 58.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.8e-29 135.6 133 54.9
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.9e-27 127.5 77 85.7
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 8.7e-24 116.7 96 68.8
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.6e-23 113.2 146 45.2
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 6.2e-22 110.5 116 57.8
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 9.0e-21 106.7 182 43.4
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.3e-19 102.8 146 47.9
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 7.9e-17 93.6 326 32.5
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-16 92.4 361 30.5
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.3e-16 92.0 130 46.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 8.7e-16 90.1 157 42.0
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 5.6e-15 87.4 212 37.3
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 7.6e-12 77.0 201 37.3
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-11 75.9 102 44.1
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 2.2e-11 75.5 85 48.2
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.9e-10 72.4 60 63.3
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.6e-09 69.3 193 34.2
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 6.0e-09 67.4 96 47.9
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 3.9e-08 64.7 45 71.1
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 5.1e-08 64.3 214 29.4
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.3e-07 61.6 77 37.7
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 3.3e-07 61.6 76 38.2
RcHm_v2.0_Chr1g0382591 Rosa chinensis HOM05D003640 ORTHO05D345170 5.7e-07 60.8 67 52.2
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 9.6e-07 60.1 190 34.2


User provided reference genes

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